| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,902,392 – 7,902,488 |
| Length | 96 |
| Max. P | 0.839254 |
| Location | 7,902,392 – 7,902,488 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 93.57 |
| Mean single sequence MFE | -17.94 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.839254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7902392 96 + 22224390 GCAAUAAAAUGCACGUAAUUCCAACUUUUCUACGUUUCUCACAUUUUAUUUAACACCCUCAACUAAGCAACUAAGUGUGAGCGAGAAAGAGGAAGA (((......)))......((((...((((((.((...(((((((((..........................))))))))))))))))).)))).. ( -17.67) >DroSec_CAF1 2998 88 + 1 GCAAUAAAAUGCACGUAAUUCCAACUUUUCUUCGUUUCUCACAUUUUAUUUAACACCCUCAAC--------UAAGUGUGAGCGAGAAAGAGGAAGA (((......)))......((((...((((((.((...(((((((((.................--------.))))))))))))))))).)))).. ( -18.07) >DroSim_CAF1 6117 88 + 1 GCAAUAAAAUGCACGUAAUUCCAACUUUUCUACGUUUCUCACAUUUUAUUUAACACCCUCAAC--------UAAGUGUGAGCGAGAAAGAGGAAGA (((......)))......((((...((((((.((...(((((((((.................--------.))))))))))))))))).)))).. ( -18.07) >consensus GCAAUAAAAUGCACGUAAUUCCAACUUUUCUACGUUUCUCACAUUUUAUUUAACACCCUCAAC________UAAGUGUGAGCGAGAAAGAGGAAGA (((......)))......((((...((((((.((...(((((((((..........................))))))))))))))))).)))).. (-17.67 = -17.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:51 2006