| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,902,181 – 7,902,275 |
| Length | 94 |
| Max. P | 0.932766 |
| Location | 7,902,181 – 7,902,275 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 90.60 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -14.65 |
| Energy contribution | -15.03 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7902181 94 + 22224390 AUUAAUGCAGACGCACAAACGAAUGAUUUAUUUCAUUUCACACACGCAAUAAAAAUCUCACUACACAUAGAACGAAUAUGGCGUGUGUUGUGUU .........((((((.....((((((......)))))).((((((((.(((....(((..........))).....))).)))))))))))))) ( -19.80) >DroSec_CAF1 2790 92 + 1 AUUAAUGCAAACGCACAAAUCAAUGAUUAAUUUCAUUUCACACACGCAAUACAAAUCUCACUACACAUAGAACGAAUAUAGCGU--GUUGUGUU .....(((....)))......(((((......))))).(((((((((.(((....(((..........))).....))).))))--).)))).. ( -14.40) >DroSim_CAF1 5904 94 + 1 AUUAAUGCAAACGCACAAAUCAAUGAUUAAUUUCAUUUCACACACGCAAUACAAAUCUCACUACACAUAGAACGAAUGUAGCGUGUGUUGUGUU ............(((((....(((((......)))))..((((((((..((((..((...(((....)))...)).))))))))))))))))). ( -20.00) >DroYak_CAF1 5968 94 + 1 AUUAAUGCAAACGCACAAACCAAUGAUUAAUUUAAUUUAACACACGCAAUACCAAUGUCUCUACACACAGAAUAAAUAUGGCGUGUGUUGUGUU .....(((....)))......................((((((((((.(((......(((........))).....))).)))))))))).... ( -17.40) >consensus AUUAAUGCAAACGCACAAACCAAUGAUUAAUUUCAUUUCACACACGCAAUACAAAUCUCACUACACAUAGAACGAAUAUAGCGUGUGUUGUGUU .........((((((......(((((......)))))..((((((((.(((......((..........)).....))).)))))))))))))) (-14.65 = -15.03 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:50 2006