Locus 2958

Sequence ID X_DroMel_CAF1
Location 7,900,182 – 7,900,302
Length 120
Max. P 0.513239
window4853

overview

Window 3

Location 7,900,182 – 7,900,302
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.36
Mean single sequence MFE -39.33
Consensus MFE -37.34
Energy contribution -37.65
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value -0.04
SVM RNA-class probability 0.513239
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7900182 120 - 22224390
AUGUAGUGGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUUGAACUGGAGCCGGUCACGGCCAAGGGUGGCAAAAAGAAGCAACGGG
.(((.((((...((((((((..((((((...(((((((.....)))))))...)))).)).((((......))))..)))).)))).)))).((((....))))........)))..... ( -39.10)
>DroSec_CAF1 806 120 - 1
AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUUGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG
.....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... ( -40.60)
>DroSim_CAF1 3923 120 - 1
AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAAAAGAUUGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG
.....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... ( -39.50)
>DroYak_CAF1 3935 120 - 1
AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGAAAAAAGAAGCAACGGG
.....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))....(.(((...))).)........))))))... ( -38.10)
>consensus
AUGUAGUUGUUAUGGCCCAGACGCUCGAGAAGGUCUUCCUGCAGAAGAUCGAAUCGAUGCCUAAGGAGGAGCUCGAACUGGAGCCGGUUACGGCCAAGGGUGGCAAAAAGAAGCAACGGG
.....((((((.((((((((....(((((....((((((((((...(((...)))..)))...))))))).))))).)))).))))......((((....)))).......))))))... (-37.34 = -37.65 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:42 2006