Locus 2954

Sequence ID X_DroMel_CAF1
Location 7,899,187 – 7,899,280
Length 93
Max. P 0.748017
window4849

overview

Window 9

Location 7,899,187 – 7,899,280
Length 93
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 70.21
Mean single sequence MFE -17.40
Consensus MFE -9.13
Energy contribution -9.47
Covariance contribution 0.34
Combinations/Pair 1.17
Mean z-score -1.82
Structure conservation index 0.52
SVM decision value 0.47
SVM RNA-class probability 0.748017
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7899187 93 + 22224390
AAUUCACGCUUUUGAAUCAAUCUAGUUGAUCUAAUAGAUUGGCACACUUUGUGUGA--------------ACUCCAAAAAAAAAUAC-ACUCCUGAAUAUAAACUUAU--------
..(((((((...((..((((((((..........))))))))..))....))))))--------------)................-....................-------- ( -15.30)
>DroSim_CAF1 2912 107 + 1
AAUUCAGGAUUUUAUACCAAUCUAGCUGACCUAAUAGAUUGGCACACUUUGUGUUAAUUACAAAAAAUGAACUCCAAAG-AAGAUACAACUCCUGAAUAUAAACUUAU--------
.((((((((.......((((((((..........))))))))....(((((.(((.(((......))).)))..)))))-..........))))))))..........-------- ( -23.50)
>DroYak_CAF1 2917 113 + 1
AAUUCAUGAUUUCAGAUCAAUCUAGCUGACUUUAUGUAUUGGCGCACAUUGAGUGAAUUACAAAAAAUUAACCCCAAAG-AU--UUUGACUCCUGAAUAUAAACAUAUAAAUAUAU
.(((((.((.((.(((((......(((.((.....))...))).(((.....))).......................)-))--)).)).)).))))).................. ( -13.40)
>consensus
AAUUCACGAUUUUAAAUCAAUCUAGCUGACCUAAUAGAUUGGCACACUUUGUGUGAAUUACAAAAAAU_AACUCCAAAG_AA_AUAC_ACUCCUGAAUAUAAACUUAU________
.(((((..........((((((((..........))))))))(((((...)))))......................................))))).................. ( -9.13 =  -9.47 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:37 2006