Locus 2953

Sequence ID X_DroMel_CAF1
Location 7,897,967 – 7,898,087
Length 120
Max. P 0.500000
window4848

overview

Window 8

Location 7,897,967 – 7,898,087
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -51.87
Consensus MFE -47.31
Energy contribution -47.53
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.91
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7897967 120 - 22224390
CAUCCCCGAUGAGCCGGUAGCCAAUGCGGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG
.(((((((.(((...(((.(((.....)))..))).))))))...((((((.((.((((..(.((((((((.((.((....)))))))))))).)..)))).)).)))))).)))).... ( -52.30)
>DroSim_CAF1 1701 120 - 1
CAUCCCCGAUGAGCCGGUAGCCAACGCAGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG
(((.((((.((.((((((.((....)).)))..((.....))....))))))))).)))(((.((((((((((((..(((.(((((...))).))))).))))))))))))..))).... ( -49.50)
>DroYak_CAF1 1702 120 - 1
CAUCCCCGAUGAGCCGGUGGCCAAUGCGGCCCACCAUCAUGGACAUGGCCACGGGCAUGGUCACGGCCACGGCCACAGUCACGGUCAUGGUCACGGACAUGGCCAUGGUCAUGGAUACGG
.....(((((((...(((((((.....)).))))).))))...((((((((.((.((((.((..(((((.((((........)))).)))))...)))))).)).))))))))....))) ( -53.80)
>consensus
CAUCCCCGAUGAGCCGGUAGCCAAUGCGGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG
.(((((((.(((...(((.((....)).))).....))))))...((((((.((.((((..(.((((((((.((........)).)))))))).)..)))).)).)))))).)))).... (-47.31 = -47.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:37 2006