Locus 295

Sequence ID X_DroMel_CAF1
Location 970,678 – 970,786
Length 108
Max. P 0.525889
window445

overview

Window 5

Location 970,678 – 970,786
Length 108
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 83.16
Mean single sequence MFE -22.81
Consensus MFE -15.53
Energy contribution -17.17
Covariance contribution 1.64
Combinations/Pair 1.06
Mean z-score -1.71
Structure conservation index 0.68
SVM decision value -0.02
SVM RNA-class probability 0.525889
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 970678 108 - 22224390
UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCGU---------UUUUCCA
.....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20)
>DroVir_CAF1 115331 112 - 1
CUGCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUGCAAUUGAGUAAAAGCAGGUCGAGACAAAGAGUGUGCGAG------CUUUUAAGC
..(((((...((((((((((((((....(((((.(....))).))).))))))))))))))..)).......(((((((...(((..(((.....))).))))------))))))))) ( -24.30)
>DroSec_CAF1 53620 108 - 1
UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCC-GGCUAAGGGGUUUUCGU---------UUUUCCA
.....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20)
>DroEre_CAF1 66737 108 - 1
UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCCU---------CUUUCGA
..........((((((((((((((....(((((.(....))).))).))))))))))))))........(((.(((((((((..-.....))))))))).))---------)...... ( -24.10)
>DroYak_CAF1 58381 108 - 1
UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCCU---------UUUUCGA
.....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20)
>DroMoj_CAF1 113061 115 - 1
CU---ACUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUGCAAUUGAGUAAAAGCAGUCCGAGACAAAGAGUGUGUGAGCUUGAGCUUUUAAGU
.(---((((((.........(((((((((.(((.((.((((((..(((((...)))))..))).))).))))))))))))))........)))))))...((((....))))...... ( -21.83)
>consensus
UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCC_GGCUAAGGGGUUUUCGU_________UUUUCGA
....(((((.((((((((((((((....(((((.(....))).))).))))))))))))))........)))))((((((((........)))))))).................... (-15.53 = -17.17 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:00 2006