Locus 2949

Sequence ID X_DroMel_CAF1
Location 7,895,743 – 7,895,848
Length 105
Max. P 0.575683
window4840

overview

Window 0

Location 7,895,743 – 7,895,848
Length 105
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.01
Mean single sequence MFE -24.03
Consensus MFE -15.42
Energy contribution -15.40
Covariance contribution -0.02
Combinations/Pair 1.37
Mean z-score -1.43
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.575683
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7895743 105 - 22224390
UUGGUUUGAAA--AUCAAUCAAAGUGUGUAAACAAUUUGUC---AUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA
(((((..((((--(.....((((.(((....))).))))..---..)))))(((((.((.........(((....)))..(((....)))..))))))))))))...... ( -28.50)
>DroSec_CAF1 6443 102 - 1
UUGGU-UGAAA--GUCAAUCUAAGU--GUAAACAAAAUGUC---GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA
..(((-((...--..))))).....--..........(.((---(.....((((((.((.........(((....)))..(((....)))..)))))))).))).).... ( -25.40)
>DroSim_CAF1 6346 102 - 1
UUGGU-UGAAA--GUCAAUCUAAGU--GUAAACAAAAUGUC---GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA
..(((-((...--..))))).....--..........(.((---(.....((((((.((.........(((....)))..(((....)))..)))))))).))).).... ( -25.40)
>DroEre_CAF1 6170 101 - 1
CUCGU-UGAAA--AUCAAUCUGAGU--AUAAACAA-UUGUC---GUUUCUCCGUUUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGAUGAGCAGAUGGCCGAGAAAAA
((((.-.((((--..((((.((...--.....)))-)))..---.)))).((((((.((.........(((....)))..(((....)))..)))))))).))))..... ( -22.60)
>DroYak_CAF1 6357 95 - 1
UUAGU-UGAGAAUAUCAAUCUAAGU--AU---------GUC---GCUUUUCCCUCUCGCAGAUAAAAAGCCGUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAGAA
(((((-(((.....)))).))))..--..---------...---....(((..(((((..........((((((((.(..(((....)))..)))))))))))))).))) ( -27.30)
>DroMoj_CAF1 12442 94 - 1
UUGGU--CACA--AUUA--CUA-------AAUGAA--UGUUCUCAAUUUU-CGUAUUACAGAUAAAAAGCCUUCCGGUAAAUCUAAGGACGAGCAAAUGGCCGAAAAGAA
(((((--((..--....--...-------..(((.--.....)))...((-(((.....((((.....(((....)))..))))....)))))....)))))))...... ( -15.00)
>consensus
UUGGU_UGAAA__AUCAAUCUAAGU__GUAAACAA__UGUC___GUUUUUCCAUCUCGCAGAUAAAAAGCCUUCUGGCAAGUCGAAGGACGAGCAGAUGGCCGAGAAAAA
.............................................(((((((((((.((.........(((....)))..(((....)))..))))))))...))))).. (-15.42 = -15.40 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:29 2006