Locus 2945

Sequence ID X_DroMel_CAF1
Location 7,888,760 – 7,888,861
Length 101
Max. P 0.540758
window4833

overview

Window 3

Location 7,888,760 – 7,888,861
Length 101
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 77.90
Mean single sequence MFE -36.06
Consensus MFE -26.68
Energy contribution -29.48
Covariance contribution 2.80
Combinations/Pair 1.21
Mean z-score -1.26
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.540758
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7888760 101 - 22224390
AUAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCCGUUUCGGCAUCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUAAGCAAA
......(((((((((..--..))))))((((.(((...(((((((.((..((.......))..)).)))))))..)))...)))).............))).. ( -39.10)
>DroSec_CAF1 2645 101 - 1
ACAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCCGUUUCGGCGGCUACGGGGCAGCAGCACAACAAAAAUGGACCAAAUGAUCUGAGCAAA
......(((((((((..--..))))))((((.(((...(((((((.((..((.......))..)).)))))))..)))...)))).............))).. ( -40.20)
>DroEre_CAF1 2679 101 - 1
ACAUGAUGCAUGCCAGC--GGCGGCGUUCCAAUUUCGGGUGCUGCAGUUUCGGCGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGACUUGAGUAAA
.(((.((((.((((...--))))))))((((..(((..(((((((.((..((.......))..)).))))))).....)))))))....)))........... ( -32.70)
>DroYak_CAF1 2728 101 - 1
AUAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCAGUUCCGACGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUGAGCAAA
......(((((((((..--..))))))((((.(((...(((((((.((((((.......)))))).)))))))..)))...)))).............))).. ( -38.90)
>DroAna_CAF1 2497 83 - 1
ACAUGCUGCACGCUCCCUCGGUGGC--------CGGCGGUGCUGCAG--------GCGGUGUGGC----GCCCCACAAGAACGGACCAAACGAUCUGGGCAAG
.((((((((..((.((.((((...)--------))).)).)).....--------))))))))..----((((....(((.((.......)).)))))))... ( -29.40)
>consensus
ACAUGAUGCAUGCCGGC__GCCGGCGUUCCAGUUGCCGGUGCUGCAGUUUCGGCGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUGAGCAAA
......((((((((((....)))))))((((.((....(((((((.((((((.......)))))).))))))).....)).)))).............))).. (-26.68 = -29.48 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:23 2006