Locus 2940

Sequence ID X_DroMel_CAF1
Location 7,873,756 – 7,873,852
Length 96
Max. P 0.717474
window4822

overview

Window 2

Location 7,873,756 – 7,873,852
Length 96
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -35.10
Consensus MFE -28.98
Energy contribution -29.10
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.64
Structure conservation index 0.83
SVM decision value 0.39
SVM RNA-class probability 0.717474
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7873756 96 - 22224390
ACGCACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG-----------------ACCACUUGACUUUUCU-------
.....(((((((((.((((((..(((...(((((......)))))..))))))))).)))))...(((((.....)))))-----------------....))))........------- ( -33.50)
>DroSec_CAF1 5518 99 - 1
---CACAAGAUACGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUA-GCCGCGG-----------------ACCAGUUGACUUUUCUCAGUCAC
---..........((..((((..(((...(((((......)))))..)))...(((((((.......)))))-)))))).-----------------.))...(((((......))))). ( -30.00)
>DroSim_CAF1 5534 100 - 1
---CACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG-----------------ACCACUUGACUUUUCUCAGUCAC
---..(((((((((.((((((..(((...(((((......)))))..))))))))).)))))...(((((.....)))))-----------------....))))............... ( -33.50)
>DroEre_CAF1 5643 119 - 1
ACGCACAAGAUGCGGAGCGCGAUGCCUUCACGUAUGCCAUUACGUUCGGCUGCGUUACGCAUACGCCGCGUAUGCCGCGUAUGCCGCUUUUGGCGCGACCACUUGACUU-UCUCAGUUCU
.(((.(((((.(((.((((((..(((...(((((......)))))..)))))))))..((((((((.((....)).))))))))))))))))..)))............-.......... ( -43.40)
>consensus
___CACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG_________________ACCACUUGACUUUUCUCAGUCAC
.....(((((((((.((((((..(((...(((((......)))))..))))))))).))))).(((.((....)).)))......................))))............... (-28.98 = -29.10 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:13 2006