Locus 294

Sequence ID X_DroMel_CAF1
Location 967,809 – 967,911
Length 102
Max. P 0.505839
window444

overview

Window 4

Location 967,809 – 967,911
Length 102
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 93.23
Mean single sequence MFE -37.37
Consensus MFE -33.10
Energy contribution -33.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value -0.05
SVM RNA-class probability 0.505839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 967809 102 + 22224390
CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU--------CCCC-C
.(((.....((((((((......).))))))).....))).((((.....(((((((((.(((((((......)))..))))..))))))))).)))--------)...-. ( -36.80)
>DroSec_CAF1 50764 103 + 1
CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU--------CCCCUC
.(((.....((((((((......).))))))).....))).((((.....(((((((((.(((((((......)))..))))..))))))))).)))--------)..... ( -36.80)
>DroYak_CAF1 55312 111 + 1
CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUGUGCUGAUGUGCUGGGCUCCCCUC
............((((((((....)))))).........(..(((.....(((((.(((.(((((((......)))..))))..))).)))))...)))..)))....... ( -38.50)
>consensus
CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU________CCCCUC
.(((.....((((((((......).))))))).....)))..........(((((((((.(((((((......)))..))))..))))))))).................. (-33.10 = -33.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:59 2006