Locus 2933

Sequence ID X_DroMel_CAF1
Location 7,843,900 – 7,844,015
Length 115
Max. P 0.979041
window4805

overview

Window 5

Location 7,843,900 – 7,844,015
Length 115
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 65.23
Mean single sequence MFE -31.70
Consensus MFE -15.57
Energy contribution -17.00
Covariance contribution 1.43
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.49
SVM decision value 1.83
SVM RNA-class probability 0.979041
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7843900 115 + 22224390
---GUGGCAUGUCGUAAAACGAGGCGUGGCUGCAAAGUACGCGGCCACGAAAAUUUCCAAAAAAAAAUUUUUAAUGCACACAGGCAC-GUGAAAAUUGCCCAGCGGCCAUUAGAACAUC
---(((((.(((((.....)))(((((((((((.......)))))))).................((((((((.(((......))).-.)))))))))))))...)))))......... ( -34.80)
>DroYak_CAF1 24602 110 + 1
---GUGGCAAGUCGUAAAAUGAGGCGGUGCUGCAAAGUACGCCGCCACGUGAAUUUACAA-----AAUUUUUAAUGCACGCAGUGCC-GUGAAAAUCGCCCAGCGGCCAUUAGAACAUC
---(((((...((((...))))((((.((((....)))))))))))))............-----...((((((((..(((.(.((.-((....)).)).).)))..)))))))).... ( -33.80)
>DroAna_CAF1 15398 98 + 1
AAUGUGGCAAGUCGUAAAACGGGGCGAUGCUAAAAAGUAUGCCCCCACCAAAGUCUGG-------UAUUUUAAAUACAGUCAGUGUUCCUGG-----------C-ACCAAUAAAAGG--
....(((......(((....(((((.(((((....)))))))))).((((.....)))-------)........))).(((((.....))))-----------)-.)))........-- ( -26.50)
>consensus
___GUGGCAAGUCGUAAAACGAGGCGAUGCUGCAAAGUACGCCGCCACGAAAAUUUACAA_____AAUUUUUAAUGCACACAGUGAC_GUGAAAAU_GCCCAGCGGCCAUUAGAACAUC
...(((((...(((.....)))((((.((((....)))))))))))))....................(((((((((((.........)))......(((....))))))))))).... (-15.57 = -17.00 +   1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:59 2006