| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,840,562 – 7,840,655 |
| Length | 93 |
| Max. P | 0.849552 |
| Location | 7,840,562 – 7,840,655 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -26.29 |
| Energy contribution | -26.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7840562 93 - 22224390 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUGUGUGCGUGUGCACGCACAGCAGAGUUCACAAUAACAGUGAU------AA--UUGCA-- .(((....(((((.((((..((........))..))))....((((((((....)))))))).)))))..((((.......)))).------..--.))).-- ( -31.60) >DroEre_CAF1 25979 101 - 1 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG--UGCGUGUGCACGCACACCAGAGUUCACAACAAUAGUUAAUAUCAGAAUGUUAAUAU .((((((((.(((((((((....)))).......))))).)))))--)))(((((....))))).................((((((((....)))))))).. ( -28.81) >DroYak_CAF1 21274 93 - 1 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG--UGCGUGUGCACGCACAGCAGAGUUCGCAAUAAUAGUGAA------ACUGUUGCA-- .((((((((.(((((((((....)))).......))))).)))))--)))((((....)))).(((((((((((.......))).)------))).)))).-- ( -32.41) >consensus AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG__UGCGUGUGCACGCACAGCAGAGUUCACAAUAAUAGUGAA______AAUGUUGCA__ .((.((((((..........)))))).)).((((((((((((((....))))))))..(.((......)).).......)))))).................. (-26.29 = -26.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:53 2006