| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 967,640 – 967,738 |
| Length | 98 |
| Max. P | 0.939046 |
| Location | 967,640 – 967,738 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 91.11 |
| Mean single sequence MFE | -17.65 |
| Consensus MFE | -16.72 |
| Energy contribution | -16.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.917956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 967640 98 + 22224390 UUCCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUCCACUUGACGCUUGUCUCCAUCUCCAUC-------- ..............(((((.((((..((....((((((....................))))))((((......))))))..)))).)))))......-------- ( -17.95) >DroSec_CAF1 50581 103 + 1 UUUCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUUCACUUGACGCUUGUCUCCAUCUCCAUC---AUCAU ..............(((((.((((..((....((((((....................))))))((((......))))))..)))).)))))......---..... ( -17.95) >DroYak_CAF1 55088 106 + 1 UUUCAACACCCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUACAACUCCACUUGACGCUUGUCCCCAUCUCCAUCUCUAUCUC ..............(((((.((((..((....((((((....................)))))).(((......))).))..)))).))))).............. ( -17.05) >consensus UUUCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUCCACUUGACGCUUGUCUCCAUCUCCAUC___AUC__ ..............(((((.((((..((....((((((....................)))))).(((......))).))..)))).))))).............. (-16.72 = -16.72 + -0.00)
| Location | 967,640 – 967,738 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 91.11 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -30.39 |
| Energy contribution | -30.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.939046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 967640 98 - 22224390 --------GAUGGAGAUGGAGACAAGCGUCAAGUGGAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGGAA --------......(((((.((((..(((...(((..(((((((((((((......)))))))))))))..)))...)))..)))).))))).............. ( -31.50) >DroSec_CAF1 50581 103 - 1 AUGAU---GAUGGAGAUGGAGACAAGCGUCAAGUGAAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGAAA .....---......(((((.((((..(((...((((.(((((((((((((......))))))))))))).))))...)))..)))).))))).............. ( -31.30) >DroYak_CAF1 55088 106 - 1 GAGAUAGAGAUGGAGAUGGGGACAAGCGUCAAGUGGAGUUGUACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGGGUGUUGAAA ..............(((((.((((..(((...(((..((((.((((((((......)))))))).))))..)))...)))..)))).))))).............. ( -29.20) >consensus __GAU___GAUGGAGAUGGAGACAAGCGUCAAGUGGAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGAAA ..............(((((.((((..(((...((((.(((((((((((((......))))))))))))).))))...)))..)))).))))).............. (-30.39 = -30.50 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:58 2006