Locus 2926

Sequence ID X_DroMel_CAF1
Location 7,834,268 – 7,834,364
Length 96
Max. P 0.702113
window4792

overview

Window 2

Location 7,834,268 – 7,834,364
Length 96
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 74.43
Mean single sequence MFE -22.28
Consensus MFE -11.79
Energy contribution -12.85
Covariance contribution 1.06
Combinations/Pair 1.16
Mean z-score -1.95
Structure conservation index 0.53
SVM decision value 0.35
SVM RNA-class probability 0.702113
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7834268 96 - 22224390
AGCUAUGCACUAUGGGGCCAACUAACACUAUAGUUGGCCAAAAA--GGAUAAUUUAA-AGUCAUCGAGAUGAAAUGAGA---------------UGUGCUAGGAAAAUAAUAUC
..(((.((((.....(((((((((......))))))))).....--.....((((..-..((((....))))....)))---------------))))))))............ ( -25.90)
>DroSec_CAF1 10187 101 - 1
AGCUAUGCACUAUGGGGCCAAGGAGCACUUAUGUUGGCCAAAAA--GAAUAAUUUAA-AGUCAUCGAGAUGAAAUGAGA------UGAG----AUGUGCUAGAAAAAUAAUAUC
..(((.((((.....((((((.(........).)))))).....--...........-..(((((............))------))).----..)))))))............ ( -20.60)
>DroSim_CAF1 15521 105 - 1
AGCUAUGCACUAUGGGGUCAACGGGCACUUAUAUUGGCCAAAAA--AAAUUAUUUCU-UUGCAUCGAGAUGAAAUAAGA------UGAUACAUAUGUGCUAGAAAAAUAAUAUC
..(((.((((((((..((((.(.(((.(.......)))).....--...(((((((.-.......))))))).....).------)))).)))).)))))))............ ( -22.50)
>DroEre_CAF1 17996 114 - 1
AGCAAUGCACUAUGGAGCCAACGAACACUUAUGUUGUCCAUAAUUCGCUCAAUUUAAUAGUUAUCAAGAUGAAAUUUGACCCAUCUUUUACUUGUGUGAUAGCAUAAUAAUAUC
....((((..((((((..(((((........)))))))))))..((((.((.......(((....((((((..........))))))..))))).))))..))))......... ( -20.11)
>consensus
AGCUAUGCACUAUGGGGCCAACGAACACUUAUGUUGGCCAAAAA__GAAUAAUUUAA_AGUCAUCGAGAUGAAAUGAGA______UGAU____AUGUGCUAGAAAAAUAAUAUC
..(((.((((.....((((((((........)))))))).....................((((....)))).......................)))))))............ (-11.79 = -12.85 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:47 2006