| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,830,426 – 7,830,546 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 7,830,426 – 7,830,546 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -46.68 |
| Consensus MFE | -33.58 |
| Energy contribution | -34.33 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7830426 120 + 22224390 CCUAUGAAACGAUUCUGGUGGAGCGGGCCCAGAAGGGCCUGGUGCAUCUGAAGGCGCAUAGCGGCAAAUACUGGCGCAUCGAGGGCGAAAGCAUCUCGGUGGAUGCCGAUGCGCCCAGCG ............(((.((((.(.(((((((....))))))).).)))).)))(((((((..(((((........(.((((((((((....)).))))))))).))))))))))))..... ( -57.00) >DroVir_CAF1 4063 120 + 1 CCUAUGAGACCAUUUUGGUCGAGCGCGCCCAAAAGGGCAUGGUCCAUUUGAAGGCGCACAGCGGUAAAUAUUGGCGCGUCGAGGGCGAGAGCAUUUCGGUGGAUGCCGAUGCGCCAGCUG .......((((.....)))).((((((((((((.((((...)))).))))..)))))..............(((((((((((((((....)).))))(((....))))))))))))))). ( -51.90) >DroGri_CAF1 4556 120 + 1 CGUAUGAGACCAUCCUGGUGGAGCGCGCCCAAAAGGGACUCGUCCAUUUGAAGGCACACAGUGGCAAAUAUUGGCGCAUCGAUGGCGAAAGCAUCUCCGUCGACUCGGAUGCGCCCACCG ................(((((.((((.(((....)))....((((........((.(.(((((.....)))))).)).(((((((.((.....)).)))))))...))))))))))))). ( -43.30) >DroWil_CAF1 19413 120 + 1 CCUAUGAGUCCAUUCUAGUGGAGCGGGCCCAAAAGGGUAUGGUCCAUCUGAAGGCGCACAGUGGCAAAUAUUGGCGUAUUGAGGGUGAAAGUAUUUCGGUUGAUGCUGAUUUGCCCAGCG .......(.((.(((..(((((.((.((((....)))).)).)))))..))))))((.(((((((........)).))))).(((..((((((((......))))))..))..))).)). ( -40.40) >DroMoj_CAF1 4252 120 + 1 CCUAUGAGACCAUUUUGGUUGAGCGUGCACAGAAGGGCAUGGUUCAUUUGAAGGCGCACAGCGGCAAAUACUGGCGCAUUGAUGGCGAGAGCAUUUCGGUGGAUGCUGAUGCGCCCACUG .......((((.....))))((((((((........)))).)))).......(((((((((((((........)).((((((..((....))...))))))..))))).))))))..... ( -41.00) >DroPer_CAF1 17020 120 + 1 CCUACGAGACCAUCCUGGUGGAGCGCGCCCAGAAGGGACUCGUCCACCUGAAGGCGCACAGCGGCAAAUACUGGCGCAUCGAGGGCGAGAGCAUCUCUGUGGAUGCCGAGGCGCCAAGCG ............((..((((((.((.((((....))).).)))))))).)).(((((....(((((..(((.((....))((((((....)).)))).)))..)))))..)))))..... ( -46.50) >consensus CCUAUGAGACCAUUCUGGUGGAGCGCGCCCAAAAGGGCAUGGUCCAUCUGAAGGCGCACAGCGGCAAAUACUGGCGCAUCGAGGGCGAAAGCAUCUCGGUGGAUGCCGAUGCGCCCACCG ............(((.((((((.((.((((....)))).)).)))))).)))(.(((...))).).......((((((((((((((....)).))))(((....)))))))))))..... (-33.58 = -34.33 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:44 2006