Locus 2922

Sequence ID X_DroMel_CAF1
Location 7,827,672 – 7,827,765
Length 93
Max. P 0.500000
window4785

overview

Window 5

Location 7,827,672 – 7,827,765
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.37
Mean single sequence MFE -29.08
Consensus MFE -20.06
Energy contribution -20.87
Covariance contribution 0.81
Combinations/Pair 1.09
Mean z-score -1.42
Structure conservation index 0.69
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7827672 93 + 22224390
CAUCAGCA---CCAUGAACGGCCA------GGGCUGCGAGCUGGGCCACAGCAAUGGCGACAUCAUCUCACAGAAUCAACAGAAGGGAUGGUGGACCAUCGG
...((((.---((.((......))------))))))(((((((.....))))..(((...(((((((((...............)))))))))..)))))). ( -29.36)
>DroVir_CAF1 2 82 + 1
--------------UGAACGGCCA------GGGCUGUGAGCUGGGCCACAGCAAUGGGGACAUUAUAUCACAGAAUCAACAGAAGGGCUGGUGGACCAUCGG
--------------....(.((((------(..((((((((((.....))))((((....))))...))))))..((....))....))))).)........ ( -27.30)
>DroGri_CAF1 2 82 + 1
--------------UGAACGGCCA------GGGCUGUGAGCUGAACCACAGCAAUGGCGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG
--------------....((((((------..((((((........))))))..))))..(((((.(((...............))).)))))......)). ( -25.46)
>DroWil_CAF1 14733 96 + 1
CAUAAGCACCACCAUGAACGGCCA------AGGCUGUGAGUUAAAUCACAGCAAUGGUGACAUUAUAUCACAGAACCAACAGAAGGGCUGGUGGACCAUUGG
........((((((......(((.------..(((((((......)))))))((((....)))).....................)))))))))........ ( -29.60)
>DroMoj_CAF1 2 82 + 1
--------------UGAACGGCCA------GAGCUGUGAGCUGGGCCACAGCAAUGGGGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG
--------------....(.((((------(..(((((((.(((.((.((....)).))...))).)))))))..((.......)).))))).)........ ( -27.60)
>DroAna_CAF1 9 99 + 1
CAUCAGCA---CCAUGAACGGCCAGGGCCAGGGCUGCGAGCUGGGCCACAGCAACGGGGACAUCAUCUCACAGAACCAACAGAAGGGAUGGUGGACCAUCGG
...((((.---((......(((....))).))))))(((((((.....))))....((..(((((((((...............)))))))))..)).))). ( -35.16)
>consensus
______________UGAACGGCCA______GGGCUGUGAGCUGGGCCACAGCAAUGGGGACAUCAUCUCACAGAACCAACAGAAGGGCUGGUGGACCAUCGG
...................((((..........((((((((((.....)))).(((....)))....)))))).((((.(......).)))))).))..... (-20.06 = -20.87 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:41 2006