| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 966,851 – 966,952 |
| Length | 101 |
| Max. P | 0.989602 |
| Location | 966,851 – 966,952 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -15.27 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.71 |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.989602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 966851 101 - 22224390 UAUCAAAUAAACUGA-------------AUACUGAAAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU-----GGCCUUUAAGCGGGUA ...............-------------................(((...((((((.((.((...((.((((((((.......)))))))).))..))-----.))))))..)).))). ( -18.00) >DroSec_CAF1 49809 86 - 1 UAUCAAA---------------------------AAAACUGAAAACUAAAGCAAAGUGUGAUA-AAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU-----GGCCUUUAAGCGGGUA .......---------------------------..........(((...((((((.((.((.-.((.((((((((.......)))))))).))..))-----.))))))..)).))). ( -18.80) >DroYak_CAF1 54282 119 - 1 UUUCAGAAAACUGAAAACGAAAAACUGAAAACGCAGAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAGUGUCAGUUCAAUGAGGUGGGUGAGAUGGCCUUAAAGCGGGUA ((((((....))))))...............(((.(((((((..(((....((....(((((.....))))))).))).)))))))..((((((.(......).))))))..))).... ( -27.70) >consensus UAUCAAA_AA____A_____________A_AC__AAAACUGAAAACUAAAGCAAAGUGUGAUAAAAUGUCAUUGAAAUGUCAGUUCAAUGAGGUGGGU_____GGCCUUUAAGCGGGUA ............................................(((...((.............((.((((((((.......)))))))).))((((......))))....)).))). (-15.27 = -15.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006