| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,815,221 – 7,815,311 |
| Length | 90 |
| Max. P | 0.519399 |
| Location | 7,815,221 – 7,815,311 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 95.05 |
| Mean single sequence MFE | -12.65 |
| Consensus MFE | -12.61 |
| Energy contribution | -12.43 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.29 |
| Structure conservation index | 1.00 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7815221 90 - 22224390 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAUAUAUAUCUCUGGGAAUAUCUGGAAUAUUU--UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........((..(......)..))......--..))))................ ( -12.40) >DroSec_CAF1 17817 90 - 1 CGUUACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAUAUAUAUCUCUGGGAAUAUCUGGAAUAUUU--UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........((..(......)..))......--..))))................ ( -12.40) >DroEre_CAF1 18856 89 - 1 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU--AUACCUCUGGGAAUAUCUAGAAUACUUU-UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....)))))..--.....(((((......))))).......-..))))................ ( -13.40) >DroYak_CAF1 18878 90 - 1 CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU--AUAUCUCUGGGAAUAUCUGGAAUAUUUUUUUUGGCCAACAAAUUUCUCACA ..................(((((((((.....)))))..--.....((..(......)..))..........))))................ ( -12.40) >consensus CGUCACACCCUUCACUUCGCCAAUUCGAAUUUCGAAUAU__AUAUCUCUGGGAAUAUCUGGAAUAUUU__UUUGGCCAACAAAUUUCUCACA ..................(((((((((.....))))).........(((((......)))))..........))))................ (-12.61 = -12.43 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006