Locus 2918

Sequence ID X_DroMel_CAF1
Location 7,814,833 – 7,814,935
Length 102
Max. P 0.910347
window4780

overview

Window 0

Location 7,814,833 – 7,814,935
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 88.07
Mean single sequence MFE -37.49
Consensus MFE -32.40
Energy contribution -33.52
Covariance contribution 1.12
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.86
SVM decision value 1.07
SVM RNA-class probability 0.910347
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7814833 102 + 22224390
CAGACGGCUGUGCUAACAGAGCGCUGCUAUGGUGAGAAGCCGCCGCAAUGGCAACAGUGCCAUCUCUGGCCGGCGAUACAAAUAGCGCAACUUCGCUCGCAA
..(((((((.((....)).)))((.(((((..((....(((((((..((((((....))))))...))).))))....)).))))))).....)).)).... ( -34.40)
>DroSec_CAF1 17414 102 + 1
CAGACGGCUGUGCUAACAGAGCUCGUCUAUGGUGAGAAACCGCUGCAAUGGCAACAGUGCCAUCUCUGGCGGGCGAUACAAAUAGCGCAACUUCGCUCGCAA
.((((((((.((....)).))).)))))...(((((...((((((..((((((....))))))..).)))))(((..........))).......))))).. ( -37.50)
>DroEre_CAF1 18452 102 + 1
UAAACGGCAGUGCUAGCAUAGCUCUGCUAUGGCGAGAAACCGCCGCGAUGAUAACAGUGGCAUCUCUGGCGGGCGAUACAAAUAGCGCGGCUUUGCUCGCAA
..........(((.((((.((((.((((((.........((((((.((((..........))))..)))))).........)))))).)))).)))).))). ( -36.07)
>DroYak_CAF1 18470 102 + 1
UAAACGGCAGUGCUAACAGAGCGCUGCUAUGGCGAGAAAUCGCCGCGAUGGUAACAGUGGCAUCUCUGGCGGGCGAUACAAAUAGCGCGGCUACGCUCGCAA
.....(((((((((.....)))))))))..(((((....)))))..((((.((....)).))))....(((((((.......((((...))))))))))).. ( -42.01)
>consensus
CAAACGGCAGUGCUAACAGAGCGCUGCUAUGGCGAGAAACCGCCGCAAUGGCAACAGUGCCAUCUCUGGCGGGCGAUACAAAUAGCGCAACUUCGCUCGCAA
.....(((((((((.....)))))))))...(((((...((((((.(((((((....))))))).).)))))(((..........))).......))))).. (-32.40 = -33.52 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006