Locus 2917

Sequence ID X_DroMel_CAF1
Location 7,814,365 – 7,814,471
Length 106
Max. P 0.718105
window4779

overview

Window 9

Location 7,814,365 – 7,814,471
Length 106
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 93.02
Mean single sequence MFE -40.47
Consensus MFE -34.33
Energy contribution -34.20
Covariance contribution -0.13
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.85
SVM decision value 0.39
SVM RNA-class probability 0.718105
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7814365 106 + 22224390
GCAUCUCCACCAGAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUUGGC---UGCAGCUGCAAUU
......(((((...((((((((((...((...))....)))))))))).((.....))))))).(((((((((((..((((...))))..)))---))))))))..... ( -44.30)
>DroSec_CAF1 16953 106 + 1
GCAUCUCCACCGAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUUGGC---UGCAGCUCCAAUU
......(((((...((((((((((...((...))....)))))))))).((.....)))))))..((((((((((..((((...))))..)))---)))))))...... ( -41.40)
>DroEre_CAF1 17970 109 + 1
GCAUCUCCACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGUGUCUUUCGGGUGGCCAGCUGCAGUUUCGGAUGCAGUUUUGGGCUUUUGCUUCUGCAAUU
((....(((((...((((((((((...((...))....)))))))))).((.....)))))))(((((((((........))))))..)))))..((((....)))).. ( -38.00)
>DroYak_CAF1 18011 106 + 1
GCAUCUCUACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUCUCGGGUGGCCAGCUGCAGUUUCGGAUGCACUUUUGGGC---UGCAUCUGCAAUU
(((.(((((((...((((((((((...((...))....)))))))))).((.....)))))))..)).)))((((.((((((((((....)).---)))))))).)))) ( -38.20)
>consensus
GCAUCUCCACCAAAGUCUCGGUUGCCAGCCAAGCAAAACGGCCGAGACGCGUCUUUCGGGUGGCCAGCUGCAGUCUCGGAUGCAGUUUUGGGC___UGCAGCUGCAAUU
(((....((((...((((((((((...((...))....)))))))))).((.....))))))((((((((((........)))))))...)))...))).......... (-34.33 = -34.20 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:36 2006