Locus 2916

Sequence ID X_DroMel_CAF1
Location 7,809,201 – 7,809,292
Length 91
Max. P 0.689001
window4778

overview

Window 8

Location 7,809,201 – 7,809,292
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 82.56
Mean single sequence MFE -28.33
Consensus MFE -19.58
Energy contribution -20.50
Covariance contribution 0.92
Combinations/Pair 1.27
Mean z-score -1.96
Structure conservation index 0.69
SVM decision value 0.32
SVM RNA-class probability 0.689001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7809201 91 - 22224390
CACCGCUUUGCGCAACUACCUCGGUCUAAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUU
......(((((((.......(((((......)))))....)))))))(((...((((((.....))))))(((((.....)))))..))). ( -27.00)
>DroSim_CAF1 12471 91 - 1
CACCGCUCUGCGCAACUACCUCGGUCUGAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC
......(((((((.......(((((......)))))....)))))))(((...((((((.....))))))(((((.....)))))..))). ( -29.60)
>DroEre_CAF1 12696 91 - 1
CACCGCUCUGCGCAACUAUCUCGGCCUGAAUGCCGAGCUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC
......(((((((......((((((......))))))...)))))))(((...((((((.....))))))(((((.....)))))..))). ( -34.30)
>DroWil_CAF1 9836 88 - 1
UACCGCUCUCCGCAAUUAUCUUGGCCUUAAUGCUGAGCUUGUCCAGAAUCAUAUGCGCAAUAAGAGCAUA---ACAAUUUCCGGACAUCUC
....((((...(((.(((.........)))))).)))).(((((.(((...(((((.(.....).)))))---.....))).))))).... ( -20.20)
>DroYak_CAF1 12916 91 - 1
CACCGCACUGCGCAACUACCUCGGUCUGAAUGCCGAAUUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC
.......((((((.......(((((......)))))....)))))).(((...((((((.....))))))(((((.....)))))..))). ( -28.40)
>DroAna_CAF1 13807 88 - 1
CACCGCUCUGAGGAACUACCUCGGCCUGAACGCCGAGCUGGUGCAGAAUCACAUGCGUUUCAAGAGCAGCACCAUAAUG---GCGCCGUCC
....(((((((((.((((.((((((......)))))).))))(((........))).)))).))))).((.((.....)---).))..... ( -30.50)
>consensus
CACCGCUCUGCGCAACUACCUCGGCCUGAAUGCCGAACUGGUGCAGAAUCACAUGCGCUACAAGAGCGUAUCCACAAUGAGUGGACCGAUC
....(((((...........(((((......)))))..(((((((........)))))))..)))))...(((((.....)))))...... (-19.58 = -20.50 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:35 2006