| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,807,056 – 7,807,176 |
| Length | 120 |
| Max. P | 0.512007 |
| Location | 7,807,056 – 7,807,176 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -27.82 |
| Energy contribution | -27.08 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7807056 120 - 22224390 CUGCUAUAUCCGGAGGCCAGCAAUGCCAAGCCGGCCAACACGCUUAGUUGGCUAAAUGCCCGACCCUGGGUAACAAAGCACCACCAUGUGCUCUGCGUCAAGCGGAUCUUCACGCGCAAA .(((..(((((((.((((.((........)).))))..........((((((.....).))))).)))))))....(((((......)))))..((((.(((.....))).))))))).. ( -37.80) >DroPse_CAF1 11180 120 - 1 CUACUCUACCCGGAGACGGCGUCCUCAAAGCCGGCCAACACGCUCAGCUGGCUGAACGCUCGUCCUUGGGUGACCAAGCACCACCAUGUGCUGUGUGUGAAGCGCAUCUUCACGCGCAAA ......((((((..((((((((......(((((((...........)))))))..)))).))))..))))))....(((((......)))))((((((((((.....))))))))))... ( -50.90) >DroGri_CAF1 8979 120 - 1 CUCCUCUAUCCGGAGACGACGAAUGCGAAGCCGGCGAAUACGCUCAGCUGGCUAAAUGCCCGUCCCUGGGUGACCAAGCAUCAUCAUGUCCUUUGCGUGAAGCGCAUCUUCACACGCAAA ...........(((.(.((.((.(((..(((((((((......)).)))))))....(((((....)))))......))))).)).).))).((((((((((.....))))))..)))). ( -36.90) >DroWil_CAF1 7930 120 - 1 CUCCUCUAUCCGGAGACAACGAAUGCCAAACCAGCCAAUACACUCAGUUGGCUGAAUGCUCGUCCCUGGGUAACUAAGCAUCAUCAUGUGCUCUGUGUGAAGCGUAUUUUUACCCGCAAA ((((.......))))........(((.....((((((((.......)))))))).............((((((....((.(((.(((.......)))))).))......))))))))).. ( -31.40) >DroMoj_CAF1 16750 120 - 1 CUGCUCUAUCCGGAGACAACGAACGCCCGGCCAGCGAACACGCUCAGCUGGCUCAAUGCACGUCCCUGGGUGACCAAGCAUCAUCAUGUGCUCUGUGUGAAACGCAUCUUCACACGCAAG .(((..(((((((.(((..((......))((((((((......)).)))))).........))).)))))))....(((((......)))))..(((((((.......)))))))))).. ( -38.80) >DroAna_CAF1 11843 120 - 1 CUGCUCUACCCCGAGACGACGAACUCCAAGCCGGCUAACACGCUCAGCUGGCUGAAUGCCAGGCCCUGGGUAACGAAGCACCACCACGUGCUCUGCGUGAAGCGCAUCUUCACCCGCAAG .(((..(((((.(((........)))..((((((((.........))))))))..............))))).((.(((((......))))).)).((((((.....))))))..))).. ( -34.00) >consensus CUGCUCUAUCCGGAGACGACGAACGCCAAGCCGGCCAACACGCUCAGCUGGCUGAAUGCCCGUCCCUGGGUAACCAAGCACCACCAUGUGCUCUGCGUGAAGCGCAUCUUCACACGCAAA ......(((((((.(((...........(((((((...........)))))))........))).)))))))....(((((......))))).(((((((((.....))))))..))).. (-27.82 = -27.08 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:34 2006