| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,789,263 – 7,789,383 |
| Length | 120 |
| Max. P | 0.578289 |
| Location | 7,789,263 – 7,789,383 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.50 |
| Mean single sequence MFE | -37.50 |
| Consensus MFE | -23.37 |
| Energy contribution | -22.30 |
| Covariance contribution | -1.07 |
| Combinations/Pair | 1.66 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7789263 120 + 22224390 UGGGGUUUCGCAUCGAAAUCGCGAUGCGAAUCGUAUACUUUCCUUAUCUGUGUUUCCUUAUUGUUUUGACUAUUGGCCGUUUUGGCCAGAUAAUUCCACAGGGCGCGUUCCAGGGCGAUG (((((.(((((((((......)))))))))...........)))))((((((..........((....))..((((((.....)))))).......))))))((.(......).)).... ( -32.60) >DroSec_CAF1 7034 120 + 1 UGGGGUUUCGCAUCGAAAUCCCGAUGCGAAUCGUAUACUUUCCUUAUCUGGGUUUCCUUAUUGUUCUGACUAUUGGCCGUUUUGGCCAGAUAGUUCCACAGAGCUCGUUCCAGGGCGAUA (((((.(((((((((......)))))))))..........(((......)))...)))))..((((((((((((((((.....))))).)))))....))))))(((((....))))).. ( -40.60) >DroSim_CAF1 11531 120 + 1 UGGGGUUUCGCAUCGAAAUCCCGAUGCGAAUCGUAUACUUUCCUUAUCUGGGUUUCCUUAUUGUUCUGACUAUUGGCCGUUUUGGCCAGAUAGUUCCACAGAGCUCGUUCCAGGGCGAUA (((((.(((((((((......)))))))))..........(((......)))...)))))..((((((((((((((((.....))))).)))))....))))))(((((....))))).. ( -40.60) >DroYak_CAF1 9875 120 + 1 GCGGGUUUCGCAUCGAAAUCCCGAUGCGAAUCGUAUACUUUCCUUAUCUGGGUUUCCUUAUUGUUCUGGCUAUUGGCCGUUUUGGCCAGAUAAUCCCACAGGGCGCGUUCCAGGGCAAUA ((((..(((((((((......)))))))))))))......(((......)))......(((((((((((...((((((.....)))))).....(((...)))......))))))))))) ( -40.90) >DroMoj_CAF1 11071 120 + 1 UGACGCUUAUUAAUAAAGUUGCGAUGCGAGUCGUAAACCUUGCGCAAUUGUGUCUCCUUGUUGUUUUGGCUAUUUGCCGUUUUGUUCAAAUAAAUCCAGAGCGCACGCUCCAAACUGAGA .(((((..........((((((...(((((........))))))))))))))))..((((((.....(((.....)))....................((((....))))..))).))). ( -24.60) >DroAna_CAF1 8516 120 + 1 AGCGGACGUCCGUUGAAGUCCCUGUGGGAGUCGAAUAUUUUGCGCAGCUGCGUCUCCUUGUUGUUCUGGCUGUUGGCCGUCUUCUCCAGAUAGUCCCACAGGGCCUUCUCCAGGGCAAUG .......((((...((((.((((((((((((((((((....((((....))))........))))).(((.....)))..........)))..)))))))))).))))....)))).... ( -45.70) >consensus UGGGGUUUCGCAUCGAAAUCCCGAUGCGAAUCGUAUACUUUCCUUAUCUGGGUUUCCUUAUUGUUCUGACUAUUGGCCGUUUUGGCCAGAUAAUUCCACAGGGCGCGUUCCAGGGCGAUA ....(.(((((((((......))))))))).)........(((......)))......((((((((((....((((((.....))))))...........(((....))))))))))))) (-23.37 = -22.30 + -1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:24 2006