Locus 2906

Sequence ID X_DroMel_CAF1
Location 7,779,803 – 7,779,923
Length 120
Max. P 0.941222
window4764

overview

Window 4

Location 7,779,803 – 7,779,923
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -35.55
Consensus MFE -30.75
Energy contribution -31.12
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -3.07
Structure conservation index 0.86
SVM decision value 1.32
SVM RNA-class probability 0.941222
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7779803 120 + 22224390
AGUAGUCUAUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUUUUCUGUUCGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC
.((((((...(((((((.(((...........(((((((((((((((((..((((.....))))..)))))))))))))))))(((........))).......)))))))))))))))) ( -39.90)
>DroSim_CAF1 77 120 + 1
AGGAGUCUCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUACGAAAGAUUUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC
...((((...(((((((.(((...........(((((((((((((((((...(((.....)))...)))))))))))))))))(((........))).......)))))))))))))).. ( -33.00)
>DroEre_CAF1 1022 120 + 1
AGGAGUCCCUGUUUGUGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC
(((....)))....(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) ( -34.30)
>DroYak_CAF1 422 120 + 1
AGGAGUCCCUGUUUGUGGUCAAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC
(((....)))....(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) ( -35.00)
>consensus
AGGAGUCCCUGUUUGCGGUCGAAAUACAAUACUGCAUUUGUGUAUGCGAUAAGAAAGCUAUUCUGUUUGUGUGCAUAGGUGCACUGUAAUAAACCAGGAAAAUACGAUGUAAAUGACUAC
..............(((((((...((((....(((((((((((((((((..((((.....))))..)))))))))))))))))(((........)))..........))))..))))))) (-30.75 = -31.12 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006