Locus 2902

Sequence ID X_DroMel_CAF1
Location 7,768,635 – 7,768,741
Length 106
Max. P 0.896700
window4754

overview

Window 4

Location 7,768,635 – 7,768,741
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -26.32
Consensus MFE -22.01
Energy contribution -22.07
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 0.84
SVM decision value 0.99
SVM RNA-class probability 0.896700
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7768635 106 - 22224390
AAGCUUUAUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUACGCACAAGU
..((((((((.((((....)))).((((((((....--------------)))))))).........)))))))).....(((((....))))).........(((((...))))).... ( -24.50)
>DroSec_CAF1 2767 106 - 1
AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU
..((...((((((((....))...((((((((....--------------)))))))).....(((((((...))))))).)))))).)).............(((((...))))).... ( -24.50)
>DroSim_CAF1 2798 106 - 1
AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU--------------AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU
..((...((((((((....))...((((((((....--------------)))))))).....(((((((...))))))).)))))).)).............(((((...))))).... ( -24.50)
>DroYak_CAF1 2845 120 - 1
AAGCUUUUUCGUUGGUAAACCAAAAUAUGUAUAUAUGUGUAUGUAUGGGCAUACAUGUAUCAAUGUCGAUGAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU
..((((....((((((((........((((((.(((((((((((....)))))))))))(((.(((((((...)))))))...)))))))))))))))..)).(((((...))))))))) ( -31.80)
>consensus
AAGCUUUUUCAUUGGUUAACCAAAAUAUGUAUGUAU______________AUACAUGUAUCAAUGUCGAUAAAGUCGAUAAAGUGAAUGCAUUUACCGUUACAGUGCGAUGCGCACAAGU
..((...((((((((....)))).((((((((..................)))))))).....(((((((...)))))))...)))).)).............(((((...))))).... (-22.01 = -22.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:13 2006