Locus 2899

Sequence ID X_DroMel_CAF1
Location 7,765,421 – 7,765,523
Length 102
Max. P 0.948414
window4746

overview

Window 6

Location 7,765,421 – 7,765,523
Length 102
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 74.04
Mean single sequence MFE -27.34
Consensus MFE -13.20
Energy contribution -13.32
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -2.11
Structure conservation index 0.48
SVM decision value 1.38
SVM RNA-class probability 0.948414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7765421 102 - 22224390
GUUGUUAGCAAUACUUUC-UGUUACUAACUGAAUCUACGGCCAU------UUG------UGGUGUACCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGGCAAUGUA
(((((((.(......(((-.((.....)).)))......(((.(------(((------(((((......)))))))))....(((........))))))).)))))))...... ( -25.10)
>DroSec_CAF1 14590 102 - 1
GUUGUUAGCAAUACGUUC-UGUUACGAACUGAAACUACCGCCAU------UUG------UGGUGUGUCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGACAAUGUA
((((((........((((-......)))).......((((((.(------(((------(((((......)))))))))....(((........)))))))))))))))...... ( -31.20)
>DroSim_CAF1 14131 102 - 1
GUUGUUAGCAAUACGUUC-UGUUACGAACUGAAACUACCGCCAU------UUG------UGGUGUGUCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGACAAUGUA
((((((........((((-......)))).......((((((.(------(((------(((((......)))))))))....(((........)))))))))))))))...... ( -31.20)
>DroEre_CAF1 15028 107 - 1
UUUAACAUUGUUAGCCCCUUGUUCGAAACUAAAACUACCGCUAU------CCGCUAUC--AGUGUGCCAUCACUGAAAACUUCGAUAACCACUAAUCGGCGGUAACGGCAAUAUA
.............(((....((.....))......((((((...------......((--((((......))))))......((((........))))))))))..)))...... ( -22.60)
>DroYak_CAF1 14851 109 - 1
UUUGGCAACAAUACGUACUCGCUAAAA------AUGGUCGCUAUUUGUGUGCGCGAUUGUGGUGUGCCAUCACUGCGAACUUCGAUAACUACUAAUCGGCGCUAACGGCAAUGUA
.(((....)))(((((..((((.....------(((((((((((((((....))))..)))))).)))))....))))....((((........))))((.(....))).))))) ( -26.60)
>consensus
GUUGUUAGCAAUACGUUC_UGUUACAAACUGAAACUACCGCCAU______UUG______UGGUGUGCCAUCACUACAAACAUCGAUAACUACUAAUCGGCGGUAACGGCAAUGUA
...................................(((((((.................(((((......)))))........(((........))))))))))........... (-13.20 = -13.32 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006