Locus 2897

Sequence ID X_DroMel_CAF1
Location 7,757,216 – 7,757,316
Length 100
Max. P 0.732157
window4742

overview

Window 2

Location 7,757,216 – 7,757,316
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.54
Mean single sequence MFE -29.14
Consensus MFE -19.76
Energy contribution -20.16
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.68
SVM decision value 0.43
SVM RNA-class probability 0.732157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7757216 100 - 22224390
CCCAUCUCGCCGAUUAGCCGAAGGGCGCGCCUAUCGAUGACCAAUCGAUAGCUA---UUGCCGUUAUCGACACAUCCAAU-UCAAAUUCAAAUUGGA----------------UCCGAAA
......(((.((((..(((....)))(((.((((((((.....))))))))...---.)))....))))....(((((((-(........)))))))----------------).))).. ( -27.70)
>DroSec_CAF1 6378 116 - 1
CCCAUCUCGCCGAUUAGCCGAAGGGCGAGCCUAUCGAUGACCAAUCGAUAGCUA---UAGCCGUUAUCGACACAGCCAAU-UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA
......(((...........((.(((.(((.(((((((.....)))))))))).---..))).)).((((.....(((((-(........))))))...))))............))).. ( -27.40)
>DroSim_CAF1 5893 116 - 1
CCCAUCUCGCCGAUUAGCCGAAGGGCGAGCCUAUCGAUGACCAAUCGAUAGCUA---UAGCCGUUAUCGACACAGCCAAU-UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA
......(((...........((.(((.(((.(((((((.....)))))))))).---..))).)).((((.....(((((-(........))))))...))))............))).. ( -27.40)
>DroEre_CAF1 6575 119 - 1
CCCAUCUCGCCGAUAGGCAGAAGGGCACGCCUAUCGAUGACCAAUCGAUAGUUUUUUUUGUCGUUAUCGACAUAGCCAAU-UCAAAUUCAAACUGGAUUUCGAAAAGGAUAAUUCCGAAA
(((.(((.(((....)))))).)))...((((((((((.....)))))))).......(((((....)))))..))...(-((((((((.....)))))).)))..(((....))).... ( -34.90)
>DroYak_CAF1 6535 117 - 1
CCCAUCUCGCCGAUUAGCCAAAGGGCACGCCUAUCGAUGACGGAUCGAUAGUUG---UUGUCGUUAUCGACACAGCCAAUGUCAAAUUCAAAUUGGAUUUCGAAAAUCCUACAUCCGAAA
......(((.((((..(((....)))......)))).)))(((((.((((((((---(.((((....)))))))))...))))...........(((((.....)))))...)))))... ( -28.30)
>consensus
CCCAUCUCGCCGAUUAGCCGAAGGGCGCGCCUAUCGAUGACCAAUCGAUAGCUA___UUGCCGUUAUCGACACAGCCAAU_UCAAAUUCAAAUUGGAUUUCGAAAAUUAUACAUCCGAAA
......(((.((((..(((....)))....((((((((.....))))))))..............))))......(((((...........)))))...................))).. (-19.76 = -20.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006