| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,754,914 – 7,755,009 |
| Length | 95 |
| Max. P | 0.570270 |
| Location | 7,754,914 – 7,755,009 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -10.77 |
| Energy contribution | -12.30 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7754914 95 + 22224390 AAGAAAGGGAAUUUCCAAAUUGCAAACACUCUACUUUCAAGUUUUCCAAUUUUGCAUUAACUGCCUAAAGGAAUACACUAUA--------------------UAUCUUUCCAAAA--- ..(((((((.....))........................((.((((......(((.....))).....)))).))......--------------------...))))).....--- ( -11.90) >DroSec_CAF1 3901 116 + 1 AAGAAAAGGAAUUUCUAAAUUGCAAACAC--UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((....................--..(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... ( -19.70) >DroSim_CAF1 3420 116 + 1 AAGAAAAGGAAUUUCUAAAUUGCCAACAC--UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((....................--..(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... ( -19.70) >consensus AAGAAAAGGAAUUUCUAAAUUGCAAACAC__UACUUUCAAGUUUUCCAAUUUUGCAUUGACCGCUUGAAGGAAUAAACUACACUAUACAAAGCCACCUUUGAAAUCUUUUCAAUAUGC ..(((((((........................(((((((((....((((.....))))...)))))))))................(((((....)))))...)))))))....... (-10.77 = -12.30 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006