Locus 2894

Sequence ID X_DroMel_CAF1
Location 7,753,526 – 7,753,624
Length 98
Max. P 0.867456
window4739

overview

Window 9

Location 7,753,526 – 7,753,624
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 87.04
Mean single sequence MFE -16.12
Consensus MFE -12.44
Energy contribution -11.88
Covariance contribution -0.56
Combinations/Pair 1.20
Mean z-score -1.99
Structure conservation index 0.77
SVM decision value 0.86
SVM RNA-class probability 0.867456
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7753526 98 + 22224390
AUAAACUACCAUUCUUUUACUGUCAAAUUAAGCUUCAAAUUCGAAAUUCGAUAAGUAACCGAUAUUUAUCGAUAGGCAAAGGAUUACCCUCGCACAUA
..........(((((((..(((((.........(((......)))....((((((((.....)))))))))))))..))))))).............. ( -16.40)
>DroSec_CAF1 2503 98 + 1
AUAAACUACCAUUCCUUUAUUGACAAAUUAAGCUUCAAGUUCAAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA
............((((((.((((...........)))).........((((((((((.....)))))))))).....))))))............... ( -16.50)
>DroSim_CAF1 2026 98 + 1
AUAAACUACCAUUCCUUUAUUGACAAAUUAAGCUUCAAGUUCAAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA
............((((((.((((...........)))).........((((((((((.....)))))))))).....))))))............... ( -16.50)
>DroEre_CAF1 2632 85 + 1
AUAAACUAUUAUUAUUUUACUAUCAAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUAUUUAUCGAUAGGCUAAGGAUU-------------
...................(((((...(..(((.....)))..).....((((((((.....)))))))))))))..........------------- ( -12.10)
>DroYak_CAF1 2548 98 + 1
AUAAAGUACCAUUCUUUUACUGUCUAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGACUACCCUCCCGCAUU
.....((.............((((((.(..(((.....)))..)...((((((((((.....))))))))))))))))..(((......))).))... ( -19.10)
>consensus
AUAAACUACCAUUCUUUUACUGUCAAAUUAAGCUUCAAGUUCGAAAUUCGAUAAGUAACCGAUACUUAUCGAUAGGCAAAGGAUUACCCUCCCACAUA
.....................................(((((.....((((((((((.....))))))))))........)))))............. (-12.44 = -11.88 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006