Locus 2893

Sequence ID X_DroMel_CAF1
Location 7,751,054 – 7,751,166
Length 112
Max. P 0.959823
window4738

overview

Window 8

Location 7,751,054 – 7,751,166
Length 112
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 85.36
Mean single sequence MFE -39.85
Consensus MFE -27.96
Energy contribution -29.65
Covariance contribution 1.69
Combinations/Pair 1.14
Mean z-score -2.72
Structure conservation index 0.70
SVM decision value 1.51
SVM RNA-class probability 0.959823
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7751054 112 - 22224390
GGUUGUGUUAUUUCUAGUGUACGUUUGCAUCUCCGGUUCGAUUUCCGUAGCCGGAAUGAAUCGGGGAUUGGGCUUGGGACAAGUGUGGGGAUGGGGAUGGGAAUUAAGACGA---
..((((.(((.((((.((.(.(((((.(((((((((((((..(((((....))))))))))))))))).(.(((((...))))).)).))))).).)).)))).))).))))--- ( -36.70)
>DroSec_CAF1 5 115 - 1
GGUUGUGUUAUUUCUAGUGUACGUUUGCAUCUCCGGUUCGAUUUCCGUAGCCGGAAUGGAGCGGGGAUUGGGCCUGGGACGGGUGUGGGGAUGGGGAUGGGAAUUAAGACGAUGA
.(((((.(((.((((......(((((.(((((((((((((((..((((..((.....)).))))..))))))))....((....))))))))).))))))))).))).))))).. ( -43.50)
>DroEre_CAF1 6 109 - 1
GGUUGUGUUAUUUCUAGUGUACGUGUGCAUCUCCGUAUCCGUUUCCGUAGCCGGAAUAGAACGGGGAUUGGGAU------GGGGAUGGGGAUCGGGAUGGGAAUUAAGACGAUGA
.(((((.(((.((((......(((.(.(((((((((.(((((..((((............))))..).))))))------))))))).).).)).....)))).))).))))).. ( -36.10)
>DroYak_CAF1 9 115 - 1
GGUUGUGUUAUUUCUAGUGUGCGUGUGCAACUCCGGAUCCAUUUCCGUAGCCGGAAUAGUACGGGGAUUGGGCUCGGCACGGAUAUGGGGAUGGGGAUGGGAGUCAAGACGAUGA
.(((((.(((((((((...(((....))).(((((..(((((.(((((.(((((..((((......))))..).))))))))).)))))..))))).))))))).)).))))).. ( -43.10)
>consensus
GGUUGUGUUAUUUCUAGUGUACGUGUGCAUCUCCGGAUCCAUUUCCGUAGCCGGAAUAGAACGGGGAUUGGGCUUGGGACGGGUAUGGGGAUGGGGAUGGGAAUUAAGACGAUGA
.(((((.(((.((((......(((((.(((((((((((((((..((((............))))..))))))))............))))))).))))))))).))).))))).. (-27.96 = -29.65 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006