| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,738,977 – 7,739,080 |
| Length | 103 |
| Max. P | 0.653803 |
| Location | 7,738,977 – 7,739,080 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.14 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -19.88 |
| Energy contribution | -19.12 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7738977 103 + 22224390 CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAUUUUGGCAGUAA----------GACUAUCGCCGACAGGGAUGCCACUCAGCUUA ...((((((.......((((((((......))))))))((((.(((((......)))))...)))))))))----------)..((((.((....))))))............ ( -25.50) >DroSim_CAF1 18 103 + 1 CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAUUUUGACAGUAA----------GACUAUCGCCGACAGGGAUGCCACUCAGUUUA ...((((((.......((((((((......))))))))((((.(((((......)))))...)))))))))----------)..((((.((....))))))............ ( -26.10) >DroEre_CAF1 2145 111 + 1 CAACUUACUUAUAGCAUCGAUAGCGCCAGGGCUGUCGAGUUGUUUUUAGUUAAAUGAAAU--UGACUGUAAUAUGGCUAUCGCCUAUCGUCGACAGGGAUGCCACUCAGUCCA .((((.....(((((.((((((((......)))))))))))))....)))).........--.(((((.....((((.(((.(((.((...)).))))))))))..))))).. ( -34.30) >DroYak_CAF1 2190 111 + 1 UAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUCAAUGAAGU--UGACAGUAAAAUGGCUAUCGACUAUCGCCGGCAGGGCUGCCACUCAGUCCA ..........((((..((((((((......((((((((.(((((........)))))..)--)))))))......))))))))))))........((((((.....)))))). ( -35.50) >consensus CAACUUACUUAUAGCAUCGAUAGCACCAGGGCUGUCGAGUCGUUUUUAGUUUAAUAAAAU__UGACAGUAA__________GACUAUCGCCGACAGGGAUGCCACUCAGUCCA ....((((........((((((((......))))))))((((.(((((......)))))...)))).)))).............((((.((....))))))............ (-19.88 = -19.12 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:54 2006