| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 965,054 – 965,160 |
| Length | 106 |
| Max. P | 0.982349 |
| Location | 965,054 – 965,160 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.10 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -16.50 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 965054 106 - 22224390 UCAGUUUUCUAGGAGGGAGGCAGUAUCUGCUGUUCACAAUUUUAAUGUUUAAUAUUUCCCACAUUACAUUCGUUUGUCGUGAAAACCACGAUGACUAGAUCUUUCG .......(((((..((((((((((....)))))..(((.......))).......))))).............(..(((((.....)))))..))))))....... ( -23.20) >DroSec_CAF1 47934 89 - 1 UCAGUUUUCUAGGAGGGGGGCAGUAUCUGCUGUUC-----------------UGUUUCCCACAUUACAUUCGUUUGUCGUGAAAACCACGAUGACUAGAUCUUUCG .......(((((..(((..((((...(....)..)-----------------)))..))).............(..(((((.....)))))..))))))....... ( -27.30) >DroEre_CAF1 56269 103 - 1 UCUGUUUUCUAGGGGGGAAG---UAUUUGUUGUUCACAAUUUUAAUGUUUAAUGUUUCCCCCAUUACAUUCGUUUUUCGUGAAACCUACGAUGACUAGAAAAAAGA (((.((((((((((((((((---((((.((((....))))..........))))))))))))..............(((((.....)))))...)))))))).))) ( -28.90) >consensus UCAGUUUUCUAGGAGGGAGGCAGUAUCUGCUGUUCACAAUUUUAAUGUUUAAUGUUUCCCACAUUACAUUCGUUUGUCGUGAAAACCACGAUGACUAGAUCUUUCG .......(((((..((((((((((....)))))......................))))).............((((((((.....)))))))))))))....... (-16.50 = -17.17 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:53 2006