| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,719,262 – 7,719,360 |
| Length | 98 |
| Max. P | 0.654988 |
| Location | 7,719,262 – 7,719,360 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -21.54 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7719262 98 - 22224390 UAUUAAGAUUUUAAUUCAAUGAGUUUUUUCU-UAGGCAGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGCGGCUCAUGAGUA .............(((((.((((((......-...((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -28.40) >DroSec_CAF1 3979 99 - 1 UUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGUGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -26.20) >DroSim_CAF1 2356 99 - 1 CUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCGGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGUGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). ( -25.80) >DroYak_CAF1 4622 95 - 1 --UUGGGAUUUUUAUUUAAUGAGUUUUUA--GUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGCUUAAAUGUGAGUUAUCUCCGGGUCAUGAGUA --(((((((.(((((....(((((.....--...(((((((..........)))))))........)))))...)))))..))).)))).......... ( -20.49) >consensus UUUUAAGAUUUUAAUUCAAUGAGUUUUUUCUUUAGGCGGCUUACGCAUUUCAGUCGCCGGAAUCGUGAUUAAAUGUGAGAUAGCUGCGGCUCAUGAGUA .............(((((.((((((..........((((((..(((((((.((((((.......)))))))))))))....))))))))))))))))). (-21.54 = -21.72 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:51 2006