Locus 2884

Sequence ID X_DroMel_CAF1
Location 7,708,036 – 7,708,156
Length 120
Max. P 0.500000
window4726

overview

Window 6

Location 7,708,036 – 7,708,156
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.28
Mean single sequence MFE -39.33
Consensus MFE -35.17
Energy contribution -35.40
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.89
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7708036 120 + 22224390
AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCACGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGGAGGACAAUUUCUAGACCAGAUCCGC
.(((((.((((((((...((((((.((......))))))))..))))))))..)))))(((..((((.....(((((......)))))..(((((((.....))))))).)))).))).. ( -36.10)
>DroSim_CAF1 15905 120 + 1
AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGUAGGACUAUUUCUAGACCAGAUCUGC
.((((((((((((((...((((((.((......))))))))..)))))))).))))))........((((..(((((......)))))........((.(((....))).))....)))) ( -37.60)
>DroEre_CAF1 5666 120 + 1
AGGCCGCAGGUUGCACCAUAAUUGCGUUGAUUAGGUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGAAGGACAAUUCCUAGACCAGAUCCAC
.((((((((((((((...(((((((.(.....).)))))))..)))))))).))))))(((..((((((((.(((((......))))).)))...((((....)))).).)))).))).. ( -44.30)
>consensus
AGGCCGCAGGUUGCACCAUAAUUGUGUUGAUUAGCUAAUUAGAUGUAAUUUCGCGGCCGGAAAUUGGCAGUUGCUGCAGUCGGGCAGCCAUUAGAAGGACAAUUUCUAGACCAGAUCCGC
.((((((((((((((...((((((.((......))))))))..)))))))).))))))(((..((((((((.(((((......))))).)))...((((....)))).).)))).))).. (-35.17 = -35.40 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:47 2006