Locus 2881

Sequence ID X_DroMel_CAF1
Location 7,705,285 – 7,705,404
Length 119
Max. P 0.603032
window4722

overview

Window 2

Location 7,705,285 – 7,705,404
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -29.00
Consensus MFE -22.56
Energy contribution -23.32
Covariance contribution 0.76
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.78
SVM decision value 0.14
SVM RNA-class probability 0.603032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7705285 119 + 22224390
CACAGUGCACUUUUAGAUAUUUUUGCAGAAGUGCAGCAAC-AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCAUUCUAGUGUUCUUUUUUUUUGUAU
.(((((((((((((.((.....))..)))))))))(.(((-(...((((.((((.((((.(((((((((.....))).))))))))))))..))))))....))))).......)))).. ( -31.20)
>DroSec_CAF1 3968 114 + 1
CACAGUGUACUUUUAGAUAU--UUGCAGAAGUGCAGCAAA-CAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUU---UUUUCUUAU
((((((((((((((......--....))))))))).....-.......((((.((((((.(((((((((.....))).))))))))))....)).)))))))))....---......... ( -29.00)
>DroSim_CAF1 13254 115 + 1
CACAGUGUACUUUUAGAUAU--UUGCAGAAGUGCAGCAAC-AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUUU--UUUUCUUAU
((((((((((((((......--....))))))))).....-.......((((.((((((.(((((((((.....))).))))))))))....)).))))))))).....--......... ( -29.00)
>DroEre_CAF1 2728 104 + 1
UACAGUGUACUUUUAGAUAU--UCGCAGAAGUGCAGCAAC-AACUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGAC------------GUUCUUGUGUUUUUU-UCUUUUUAU
.....(((((((((.(....--.)..)))))))))((((.-(((.(.(((((.(((((.(((......))))))))))))).)------------))).)))).......-......... ( -24.00)
>DroYak_CAF1 4573 94 + 1
CACAGUGCACUUUUGGAUAG--UCGCAGAAGUGCAGAAGUGCAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGU-------------------UCUUGUGUGUGUU-UC----CAU
.....(((((((((((....--.).))))))))))((((..((.....((((.(((((.(((......))))))))))-------------------)).....))..))-))----... ( -31.80)
>consensus
CACAGUGUACUUUUAGAUAU__UUGCAGAAGUGCAGCAAC_AAAUGAUGAGCAGCAAAGUCGACGAUGCGAUUUGCGUUCGUCGCUUUCUUAGCCGUUCUUGUGUUUUUU_UUUUCUUAU
((((((((((((((.((.....))..)))))))))..........(((((((.(((((.(((......)))))))))))))))................)))))................ (-22.56 = -23.32 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:43 2006