Locus 2880

Sequence ID X_DroMel_CAF1
Location 7,703,451 – 7,703,561
Length 110
Max. P 0.968239
window4721

overview

Window 1

Location 7,703,451 – 7,703,561
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -37.87
Consensus MFE -25.77
Energy contribution -27.64
Covariance contribution 1.87
Combinations/Pair 1.22
Mean z-score -1.96
Structure conservation index 0.68
SVM decision value 1.62
SVM RNA-class probability 0.968239
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7703451 110 - 22224390
CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUUUGCGCUAAGUACCGUGCCAUUUUCUGCUUGUCUA----------
.....((((..((((....((((((((((((.......(.(((((((......))))))).).......)))))).(((.....)))..))))))....))))..)))).---------- ( -40.44)
>DroSec_CAF1 1362 110 - 1
CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUUUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCCAGGUAUCGUGCCAUUUUCUGCUUGUCUA----------
.....((((..((((..((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))..............))))..)))).---------- ( -41.33)
>DroMoj_CAF1 20967 120 - 1
UCGCGAUGCGUCGAUUUCCUGACGCACCGCCUUCACGAAGGCGCGACCCACCGAUUGGGCGCCAUAAACAAGGAUCUUUGCAAAAUGCUUGGCCAUUUGCUCCCACUCCGUCUCGCCCCC
..(((((((((((......)))))))..(((((....)))))(((.((((.....))))))).........(((.....(((((..((...))..)))))......)))...)))).... ( -37.30)
>DroSim_CAF1 9526 110 - 1
CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCUAGGUAUCGUGCCAUUUUCUGCUUGUCUA----------
.....((((..((((..((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))..............))))..)))).---------- ( -40.83)
>DroEre_CAF1 2 95 - 1
CUCGAAGGCCUGCAGCUCCUGCCGCAUCGUCUUAACCAGCGCCCGCCCAACCGCCUGGGCACCCAAGAUGAUGAUCUGUGCUAGGUAGCGUGCCA-------------------------
......(((..((.(((((((((.(((((((((.....(.((((((......))..)))).)..)))))))))....).)).))).)))))))).------------------------- ( -30.80)
>DroYak_CAF1 2280 110 - 1
CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUCACCAGCGCCCGUCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCCAGGUACCGUGCCAUUUUCUGCUUGUCUA----------
.....((((..((((..((((((((((((((.......(.(((((.(......).))))).).......)))))..)))))))))..............))))..)))).---------- ( -36.53)
>consensus
CUCGAAGGCCUGCAGCUCCUGGCGCAUCGUCUUUACCAGCGCCCGGCCAACCAGCUGGGCACCCAAAAUGAUGAUCUGUGCUAGGUACCGUGCCAUUUUCUGCUUGUCUA__________
......(((..((....((((((((((((((.......(.(((((((......))))))).).......)))))..)))))))))....))))).......................... (-25.77 = -27.64 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:42 2006