| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 964,706 – 964,818 |
| Length | 112 |
| Max. P | 0.807231 |
| Location | 964,706 – 964,818 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.26 |
| Mean single sequence MFE | -38.95 |
| Consensus MFE | -33.49 |
| Energy contribution | -34.43 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 964706 112 + 22224390 UU-------UGAGGUUGAUGCCUGUGGCGGA-GCAUUGAAAGCGCUUAAGCUUUUAUAUCUCGUCUGCGUGUUUGGGAUCUCAAAUGUGUACUUUGCCUCCGCUUGGGGUCACCGUGAUC ..-------...(((.(((.((...((((((-(((.(((((((......))))))).........((((..(((((....)))))..))))...)).))))))).)).))))))...... ( -39.60) >DroSec_CAF1 47567 112 + 1 UU-------UGAGGUUGAUGCCUGUGGCGGC-GCAUUGAAAGCUCUUAAGCUUUUAUAUCUCGGCUGCGAGUUUGGGAUCUCAGAUAUGUACUUUGCCUCCGCUUGGGGUCACUGUGAUC ..-------...(((.(((.((.((((.(((-((..((((((((....)))))))).......))((((.((((((....)))))).))))....))).))))..)).))))))...... ( -34.10) >DroEre_CAF1 55913 113 + 1 UU-------UGAGGUUGAUGCCUGUGGCGGAGGCAUUGAAAGCGCUUAAGCUUUUAUAUCUCAGCUGCGUGCCUGGGAUCUUGGAUGUGUACUUUGCCUCCGCUUGAGGUCACUGUGAUC ..-------...(((((.(((((..((((((((((.(((((((......))))))).((((((((.....).)))))))...............))))))))))..))).))...))))) ( -39.90) >DroYak_CAF1 51218 120 + 1 UUUCAGAGUUGAGGUUGAUGCCUGUGGCGAAGGCAUUGAAAGCGCUUAAGCUUUUAUAUCUCAGCUGCGUGCUGGGGAUCUCAGAUGUGUACUUUGCCUCCGCCUGGGGUCACUGUGAUC ..(((.(((.......(((.((...((((.(((((.(((((((......)))))))..(((((((.....))))))).................))))).)))).)).)))))).))).. ( -42.21) >consensus UU_______UGAGGUUGAUGCCUGUGGCGGA_GCAUUGAAAGCGCUUAAGCUUUUAUAUCUCAGCUGCGUGCUUGGGAUCUCAGAUGUGUACUUUGCCUCCGCUUGGGGUCACUGUGAUC ............(((.(((.((...((((((((((.(((((((......))))))).........(((..((((((....))))))..)))...)))))))))).)).))))))...... (-33.49 = -34.43 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:52 2006