Locus 2878

Sequence ID X_DroMel_CAF1
Location 7,702,523 – 7,702,614
Length 91
Max. P 0.949588
window4718

overview

Window 8

Location 7,702,523 – 7,702,614
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 96.34
Mean single sequence MFE -23.90
Consensus MFE -22.90
Energy contribution -22.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.96
SVM decision value 1.39
SVM RNA-class probability 0.949588
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7702523 91 + 22224390
UAAGCACGCACGCACACAGCUGCAAAAACGCCUGCAGAACGGAUACGGAAGCUGGAAAUCAGAGCACGGAAACGUUUUGAUUUCAUUCAGC
...((......))...((((((((........)))....((....))..)))))(((((((((..(((....))))))))))))....... ( -25.90)
>DroSec_CAF1 559 91 + 1
CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC
...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... ( -22.90)
>DroSim_CAF1 8675 91 + 1
CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC
...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... ( -22.90)
>consensus
CAAGCACACACGCACACAGCUACAAAAACGCCUGCAAAACGGAUACGGAAGCUGGAAAUCAGAGCAAGGAAACGUUUUGAUUUCAUUCAGC
...((......))...(((((.(.......((........)).....).)))))(((((((((((..(....))))))))))))....... (-22.90 = -22.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:39 2006