| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,685,163 – 7,685,258 |
| Length | 95 |
| Max. P | 0.537616 |
| Location | 7,685,163 – 7,685,258 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 85.67 |
| Mean single sequence MFE | -14.63 |
| Consensus MFE | -12.39 |
| Energy contribution | -13.50 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7685163 95 - 22224390 AAAGUAAUCAGCGAUAAAAGUUGCGCCCACACGACUACCCCAACCCCAACC--------CCAUUAAAAAUAAAUGAACAAAAAAUGUGUAAAUACUAUAAUGA ..((((....(((((....)))))....(((((.......)..........--------.((((.......))))..........))))...))))....... ( -8.20) >DroSec_CAF1 3019 97 - 1 AAGGUAAUCAGCGAUUAAAGUUGCGCCCACACGA--ACCAC----ACCCCCUCAUUGGGGCAUUAAAAAUAAAUGAACAAAAAAUGUGUAAAUACUAUAAUGA ..((((....(((((....)))))....(((((.--.....----..((((.....))))((((.......)))).........)))))...))))....... ( -17.90) >DroSim_CAF1 3050 101 - 1 AAAGUAAUCAGCGAUAAAAGUUGCGCCCACACGA--ACCACCUCCCCCCCCUCAUUGGGGCAUUAAAAAUAAAUGAACAAAAAAUGUGUAAAUACUAUAAUGA ..((((....(((((....)))))....(((((.--...........((((.....))))((((.......)))).........)))))...))))....... ( -17.80) >consensus AAAGUAAUCAGCGAUAAAAGUUGCGCCCACACGA__ACCAC__CCCCCCCCUCAUUGGGGCAUUAAAAAUAAAUGAACAAAAAAUGUGUAAAUACUAUAAUGA ..((((....(((((....)))))....(((((..............((((.....))))((((.......)))).........)))))...))))....... (-12.39 = -13.50 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:33 2006