| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,684,296 – 7,684,397 |
| Length | 101 |
| Max. P | 0.524849 |
| Location | 7,684,296 – 7,684,397 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.53 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.42 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7684296 101 + 22224390 UUACUGGUC--GCUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUGGGAAUGCGGUCA .........--..((((..(...............(((....)))...........((((((......)))))))-..))))(((((((.......))))))). ( -24.00) >DroVir_CAF1 4281 87 + 1 UU-----UUUUAAUUGUUG----------AAAAUCGCAUAAAUGCAAUUAUAAAAUUUCUCAUCAAU-UGGGCAA-CGGUCGCAACGCGGUUCAGUUGCGGUCA ..-----........((((----------......(((....))).............((((.....-)))))))-)(..((((((........))))))..). ( -21.20) >DroPse_CAF1 24627 98 + 1 UU-----UUAUAAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUUUCAGUGCGGUCA ..-----..........(((..((((..(((((((((......((((((....))))))......((((((.(..-.).)))))).)))))))))))))..))) ( -24.60) >DroYak_CAF1 2531 102 + 1 UCACUGGUC--GCUGAUUGCAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAUUUGGUCAGAUCGCGGUGGAAAUGCGGUCA ....((..(--..((((((((..((...((....))..))..))))))))......((((((......))))))...)..))(((((((.......))))))). ( -26.40) >DroAna_CAF1 49254 101 + 1 UUAUCGAGC--GCUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCGGAUCGCGGUGGAAAUGCGGUCA ...((.(.(--((.((((.((....((((......(((....)))............(((((......)))))))-)).)).))))))).).)).......... ( -24.50) >DroPer_CAF1 25037 96 + 1 UU-----UA--AAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU-UGGUCAGAUCGCGGUUUCAGUGCGGUCA ..-----..--......(((..((((..(((((((((......((((((....))))))......((((((.(..-.).)))))).)))))))))))))..))) ( -24.60) >consensus UU_____UC__AAUGAUUGGAAGUACAAUGAAAUCGCAUAAAUGCAAUUAUAAAAUUGCUCAUCAAUUUGGGCAU_UGGUCAGAUCGCGGUGGAAAUGCGGUCA .............(((((.................(((....)))...........((((((......))))))...)))))(((((((.......))))))). (-17.11 = -17.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006