| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 962,863 – 962,953 |
| Length | 90 |
| Max. P | 0.632118 |
| Location | 962,863 – 962,953 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 89.01 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -24.39 |
| Energy contribution | -23.20 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 962863 90 - 22224390 CUUAAG-----AGGCUACCUUAAAGUUUCUCAUCCGGGAAAUCGGAUCCGGGCACCCAAUUAGGCGGGUGUUGGGUUUCCUACCUUCACGAUUUC .....(-----(((..........(((((((....))))))).(((.((.(((((((........))))))).))..)))...))))........ ( -27.40) >DroSec_CAF1 45769 89 - 1 CUUAAG-----GGGCUGCCUUA-AGUUUCUCAUUCGGGAAAUCGGAUCCGGGCACCCAAUUAGGCGGGUGUUGGGUUUUCUACCUUCACGAUUUC ((((((-----(.....)))))-))........(((.(((...(((.((.(((((((........))))))).))...)))...))).))).... ( -28.20) >DroEre_CAF1 54089 90 - 1 CUUAAG-----AGGCUGCCUUAAAGUUUCUCAUCCGGGAAAUCGGAUCCAGGCACCCAAUUAGGCGGGUGUUAGGUUUCCUACCUUCACAUUCUC (((((.-----.((.(((((....(((((((....))))))).......))))).))..))))).((((((.((((.....))))..)))))).. ( -26.00) >DroYak_CAF1 49277 95 - 1 CUCAAGCGGCGAGGCUGCCUUAAAGUUGCUCAUCCGGGAAAUCGGAUCCAGGCACCCAAUUAGGCGGGUGUCAGGUUUCCUACCUUCGCAUUUUC .....((((..(((..((((...........((((((....))))))...(((((((........)))))))))))..)))....))))...... ( -32.00) >consensus CUUAAG_____AGGCUGCCUUAAAGUUUCUCAUCCGGGAAAUCGGAUCCAGGCACCCAAUUAGGCGGGUGUUAGGUUUCCUACCUUCACAAUUUC ...........(((..((((...........((((((....))))))...(((((((........)))))))))))..))).............. (-24.39 = -23.20 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:51 2006