| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,673,384 – 7,673,503 |
| Length | 119 |
| Max. P | 0.571026 |
| Location | 7,673,384 – 7,673,503 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 95.99 |
| Mean single sequence MFE | -22.01 |
| Consensus MFE | -17.41 |
| Energy contribution | -17.13 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.571026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7673384 119 + 22224390 CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGUGAAGCGAAUAAAAAAGGGGUGUGAAAAGCGGGACAUUGGCGACAAAACACUGCCAGUCAUAAAUAUGAAAAUAUUUUAAACUGUA ((((..((......(((...(((........)))...))).........))..))))....((((....(((....)))....))))((((...((((((....))))))...)))).. ( -22.26) >DroSec_CAF1 87641 116 + 1 CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGUGAAGCGAAUGAA-AAGGGGUGUGAAAAGCGGGGCAUUGGCGACAAAACAUUGCCAGUCAUAAAUAUGAAAAUAU--UAAACUGUA ((((..((.((...(((...(((........)))...)))..))..-..))..))))....(((((((..((((((.......)))))))))...(((((....))))--)...)))). ( -23.10) >DroSim_CAF1 66281 116 + 1 CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGUGAAGCGAAUGAA-AAGGGGUGUGAAAAGCGGGGCAUUGGCGACAAAACAUUGCCAGUCAUAAAUAUGAAAAUAU--UAAACUGUA ((((..((.((...(((...(((........)))...)))..))..-..))..))))....(((((((..((((((.......)))))))))...(((((....))))--)...)))). ( -23.10) >DroEre_CAF1 86877 116 + 1 CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGUGAAACGAAUGAA-AAGGGGUGUGAAAAGCGGGGCAUUGGCGACAAAACAUUGCCAGUCAUAAAUAUGAAAAUAU--UAAACAGUG .......(((.....)))..((((.....((..(...(((..(...-.)....)))...)..)).(((..((((((.......)))))))))...(((((....))))--)...)))). ( -18.10) >DroYak_CAF1 88364 116 + 1 CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGCGAGGCGAAUGAA-AAGGGGUGUGAAAAGCGGGGCAUUGGCGACAAAACAUUGCCAGUCAUAAAUAUGAAAAUAU--UAAACCGUA ((((..((.((...(((....((........))....)))..))..-..))..))))....(((((((..((((((.......)))))))))...(((((....))))--)...)))). ( -23.50) >consensus CAUAAACUGCAAAGUGCAAAACUGAAAAACGAGUGAAGCGAAUGAA_AAGGGGUGUGAAAAGCGGGGCAUUGGCGACAAAACAUUGCCAGUCAUAAAUAUGAAAAUAU__UAAACUGUA ((((..((((....((((...((.........((...)).........))...))))....))))(((..((((((.......))))))))).....)))).................. (-17.41 = -17.13 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:25 2006