Locus 2862

Sequence ID X_DroMel_CAF1
Location 7,642,625 – 7,642,733
Length 108
Max. P 0.860870
window4692

overview

Window 2

Location 7,642,625 – 7,642,733
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.99
Mean single sequence MFE -37.34
Consensus MFE -16.72
Energy contribution -18.92
Covariance contribution 2.20
Combinations/Pair 1.39
Mean z-score -2.66
Structure conservation index 0.45
SVM decision value 0.83
SVM RNA-class probability 0.860870
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7642625 108 + 22224390
GCUGUUGGUGAAAAGCGGCAGCAC---UUGGCACUUGGCACAUGGAAGAUGCG-GAAUUUUCCCUGCUGUUUACAGUGCA--------GCAAAAGAUGGAAAAAUGUGUGAGUGCAAAUA
(((((((.(....).)))))))..---...(((((((.((((((((((((...-..))))))).((((((.......)))--------)))............))))))))))))..... ( -40.30)
>DroPse_CAF1 94708 108 + 1
GCUGCUGGUGAAGCGCUCCAGCAC---UUGGCACUCGGCACAUGGCAGAUGCG-GAAUUUGCCCUGCUGUUUACGGAGCA--------GCAAAAGAUGGAAAAAUGUGCGAGCGCAAAUA
..((((((.(.....).)))))).---...((.((((.((((((((((((...-..))))))).((((((((...)))))--------)))............))))))))).))..... ( -41.20)
>DroEre_CAF1 64581 101 + 1
GCUGUUGGUGAAAAGCGGCGGCAC---UUGCCACUUGCCACU-------UUCG-GAGUUUUCCCUGCUGUUUACAGUGCA--------GCAAGAGAUGGAAAGAUGUGUGAGUGCAAAUA
((((((.......)))))).((((---(..((((((.(((.(-------((((-(......)).((((((.......)))--------))).))))))).))).)).)..)))))..... ( -37.40)
>DroWil_CAF1 79370 119 + 1
GCUGCAAGUGAAGCGCUG-AACACUCUUUGGCACUUGGCACAUGGCAGAUGCGGGAAUUUUUCGUGCUAUUUACAGAGCAAGACUUCUGCAAAAAAUGGAAAAAUGUGUGAAGGUAAAUA
(((........)))((..-((.....))..)).(((.((((((.(((((.(((..(...)..)))(((........)))......))))).............)))))).)))....... ( -28.74)
>DroYak_CAF1 63575 98 + 1
GCUGUUGGUGAAAAGCGGCAGCAC---UUGGCACUUGGCACAUGGAAGAUGCG-GAAUUUUCCCUGCUGUUUGCAGUGCA--------G-------UGCAAAAGUAU---AGUGCAAAUA
(((((((.(....).)))))))((---((.(((((..((((..(((((((...-..))))))).(((.....))))))))--------)-------)))..))))..---.......... ( -35.20)
>DroPer_CAF1 78683 108 + 1
GCUGCUGGUGAAGCGCUCCAGCAC---UUGGCACUCGGCACAUGGCAGAUGCG-GAAUUUGCCCUGCUGUUUACGGAGCA--------GCAAAAGAUGGAAAAAUGUGCGAGCGCAAAUA
..((((((.(.....).)))))).---...((.((((.((((((((((((...-..))))))).((((((((...)))))--------)))............))))))))).))..... ( -41.20)
>consensus
GCUGCUGGUGAAAAGCGGCAGCAC___UUGGCACUUGGCACAUGGCAGAUGCG_GAAUUUUCCCUGCUGUUUACAGAGCA________GCAAAAGAUGGAAAAAUGUGUGAGUGCAAAUA
(((((((........)))))))........((.((((.((((((((((((......)))))))...(((....)))...........................))))))))).))..... (-16.72 = -18.92 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:17 2006