| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,641,709 – 7,641,809 |
| Length | 100 |
| Max. P | 0.521876 |
| Location | 7,641,709 – 7,641,809 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.17 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -24.11 |
| Energy contribution | -23.25 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7641709 100 + 22224390 UCCAUCAAAAGCAUUCGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCAUCGCUGGGCGC-CAAAAUCGAACG------------ ................(((((((..(((((((((((((((((.....))))))....)))))))(((((....)))))))))))))))-)...........------------ ( -32.60) >DroPse_CAF1 93859 102 + 1 UCCAUCAAAAGCAUUUGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCGUCGCCGAGCAC--AGCAUCGAGUGCUG--------- .........(((((((((((((..((((((((((((((((((.....))))))....))))))).)))))...))))))((.......--.))...))))))).--------- ( -32.60) >DroSec_CAF1 57841 100 + 1 UCCAUCAAAAGCUUUCGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGGCUGAUUGAGUGCUUAAUGGCAUCGCUGGGCGC-CAAAAUCGAACG------------ ................(((((((..(((((((((((((((((.....))))))....)))))))(((((....)))))))))))))))-)...........------------ ( -32.60) >DroWil_CAF1 78151 113 + 1 UCCAUCAAAAGCAUUCGGCGCCUGGAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCAUGGCUGGGCAGACUAUAUCGAGAGAUGCCACCGACA ..............((((.(((..((((((((((((((((((.....))))))....))))))).)))))...))).(((((((.....))).(((....))))))))))).. ( -32.40) >DroYak_CAF1 62814 94 + 1 UCCAUCAAAAGCAUUCGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCAUCGCUGGGUGC-U------GGGCG------------ ..........((...((((((((..(((((((((((((((((.....))))))....)))))))(((((....)))))))))))))))-)------).)).------------ ( -32.60) >DroPer_CAF1 77837 102 + 1 UCCAUCAAAAGCAUUUGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCGUCGCUGAGCAC--AGCAUCGAGUGCUG--------- .........(((((((((((((..((((((((((((((((((.....))))))....))))))).)))))...))))))((((....)--)))...))))))).--------- ( -36.90) >consensus UCCAUCAAAAGCAUUCGGCGCCCGAAGCGUUAAUCGUUGUCAAAACCUGAUAAAGACUGAUUGAGUGCUUAAUGGCAUCGCUGGGCAC_CAAAAUCGAGCG____________ ..........((..((((((((..((((((((((((((((((.....))))))....))))))).)))))...)))...)))))))........................... (-24.11 = -23.25 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:16 2006