| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 961,710 – 961,811 |
| Length | 101 |
| Max. P | 0.982250 |
| Location | 961,710 – 961,811 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 94.69 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -20.15 |
| Energy contribution | -20.02 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 961710 101 + 22224390 GCUAAUAAAGAAUGUAAAUGGAGCAAAUUGCUUGGCCGAAAGGUGAAAUUUCAUAAAUUUAGUGAAAGGGAAACGGGCGGAAUGCUGGAAAAGCGCGGAAA----- ......................((...((((((((((....)))....((((((.......))))))......)))))))...(((.....))))).....----- ( -21.70) >DroSec_CAF1 44631 101 + 1 GCUAAUAAAGAAUGUAAAUGAAGCAAAUUGCUUGGUCGAAAGGUGAAAUUUCAUAAAUUUAGUGAAAGGGAAACGGGCGGAAUGCUGGAAAAGCGCGGAAA----- ......................((...(((((((.((....)).....((((((.......))))))......)))))))...(((.....))))).....----- ( -17.10) >DroEre_CAF1 52978 101 + 1 GCUAAUAAAGAAUGUAAAUGGAGCAAAUUGCUUGGCCGAAAGGUGAAAUUUCAUAAAUUUAGUGAAAGGGAAACGAGCGGAAUGCUGGAAAAGCGCGGAAA----- ......................((...((((((((((....)))....((((((.......))))))......)))))))...(((.....))))).....----- ( -22.50) >DroYak_CAF1 48109 106 + 1 GCUAAUAAAGAAUGUAAAUGGAGCAAAUUGCUUGGCCGAAAGGUGAAAUUUCAUAAAUUUAGUGAAAGGGAAACUGGCGGAGGGCUGGAAAAGCGCGGAAAAGCAC (((.........(((.....((((.....)))).(((....)))....((((((.......))))))((....)).)))..(.(((.....))).).....))).. ( -22.60) >consensus GCUAAUAAAGAAUGUAAAUGGAGCAAAUUGCUUGGCCGAAAGGUGAAAUUUCAUAAAUUUAGUGAAAGGGAAACGGGCGGAAUGCUGGAAAAGCGCGGAAA_____ ......................((...((((((((((....)))....((((((.......))))))......)))))))...(((.....))))).......... (-20.15 = -20.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:50 2006