Locus 2859

Sequence ID X_DroMel_CAF1
Location 7,633,482 – 7,633,581
Length 99
Max. P 0.930190
window4688

overview

Window 8

Location 7,633,482 – 7,633,581
Length 99
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 77.85
Mean single sequence MFE -13.92
Consensus MFE -9.54
Energy contribution -8.68
Covariance contribution -0.86
Combinations/Pair 1.20
Mean z-score -1.86
Structure conservation index 0.69
SVM decision value 1.20
SVM RNA-class probability 0.930190
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7633482 99 - 22224390
-----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUUAUAUCA-------ACAUCAACAGCAA--ACAUGAGAUACAAC---AA
-----(((((....((((..(((.....)))...)))).......(((((.......))))).............-------........)))))--..............---.. ( -12.20)
>DroVir_CAF1 99945 99 - 1
---UGUUGUAAAACUUCUAAACAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCGGCUCAAAAUAUCAACAACAACAACAAC--------------
---((((((........(((.....))).((.(((((((((....(((((.......))))).))))))...)))))...........))))))........-------------- ( -11.70)
>DroPse_CAF1 83638 94 - 1
UUCUCUUGCCCAAGUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCACAUCA-------ACAACAGCA-CA--------------AACAGCAA
......(((...........(((.....)))(((.((((((....(((((.......))))).)))))).)))..-------.........-..--------------....))). ( -13.10)
>DroEre_CAF1 56143 102 - 1
-----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUUAUAUCA-------ACAUGGACAACAA--ACAUGAGCUACAACAACAA
-----..(((((........(((((..(((((((((...))))...)))))....)))))...............-------...((.....)).--...)))))........... ( -16.30)
>DroYak_CAF1 53335 102 - 1
-----UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCA-------ACAUCAGCAACAA--ACAUGAGCUACAACAACCA
-----..(((((........(((.....)))....((((((....(((((.......))))).))))))......-------.............--...)))))........... ( -17.10)
>DroPer_CAF1 67807 94 - 1
UUCUCUUGCCCAAGUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCACAUCA-------ACAACAGCA-CA--------------AACAGCAA
......(((...........(((.....)))(((.((((((....(((((.......))))).)))))).)))..-------.........-..--------------....))). ( -13.10)
>consensus
_____UUGCUCAACUUCUAAGCAAAUUAUGCAUGAGAAAUUCAAUUUGCAUUUAUUUUGCAAUAAUUUCAUAUCA_______ACAUCAACAACAA__ACAUG______AACA_CAA
.....((((...........))))....((.(((.((((((....(((((.......))))).)))))).)))))......................................... ( -9.54 =  -8.68 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:13 2006