| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,626,592 – 7,626,689 |
| Length | 97 |
| Max. P | 0.911558 |
| Location | 7,626,592 – 7,626,689 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -14.16 |
| Energy contribution | -13.08 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7626592 97 + 22224390 -----UUU--UUGGA----UUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCUGAAUGGGAAUGGAAA------- -----...--(((((----(((-----....((((((.......))))))..))))))))(((((.(((...(..(((((.....)))))..)..))))))))..........------- ( -22.70) >DroVir_CAF1 89618 94 + 1 --------GCUGGUAGAAAGCG-----AUUUUUAUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGGGGUGAAAUUUGCUUUGUUUGCAAAAUAAUAU------------- --------(((.......))).-----..........((((((((((((((((((........)))))))))((..((..(...)..))..))..)))))))))...------------- ( -18.00) >DroPse_CAF1 76348 116 + 1 CCCACUCUAUGGGUA----UAUUCUAGUUUUUUGUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCGGAACAAGACGAGAGAUCCAGCA ((((.....))))..----.......(((((((((.(((.(((((((((((((((........)))))))))(..(((((.....)))))..)..)))))).))))))))))))...... ( -24.70) >DroGri_CAF1 131334 93 + 1 --------GUUGGCA-AAAGCG-----AUUUUUAUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGGGGUGAAAUUCGCUUUGUUUGCAGAAUAAGGC------------- --------....((.-...)).-----.........(((((((((((((((((((........)))))))))((..((((.....))))..))..))))))))))..------------- ( -19.90) >DroEre_CAF1 49183 99 + 1 -----UUUGUUGGUA----CUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCGAAACUUGCUUUGUUUGCUGAUUGGGAAAGGCAA------- -----...(((((..----..(-----((..((((((.......))))))..))).)))))...(((((...(..((((((...))))))..)..))))).............------- ( -20.20) >DroYak_CAF1 46475 96 + 1 -----UUUUUUUGGA----AUU-----UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCCGAAUGGAAGAGG---------- -----.....(((((----.((-----(...((((((.......))))))..))))))))........((((((..((((((.(.......)))))))..))))))....---------- ( -18.30) >consensus _____UUUGUUGGUA____GUU_____UUCUUUUUGUUUAUUUUGCAAAAUUAAAUCCAACGUUUUAGUUUUAUGAGGCAAAACUUGCUUUGUUUGCAGAAUAAGAA_GG__________ ....................................(((((((.(((((((((((........)))))))))(..((((((...))))))..)..)).)))))))............... (-14.16 = -13.08 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006