| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,623,664 – 7,623,779 |
| Length | 115 |
| Max. P | 0.708822 |
| Location | 7,623,664 – 7,623,779 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 74.26 |
| Mean single sequence MFE | -36.16 |
| Consensus MFE | -13.12 |
| Energy contribution | -14.35 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7623664 115 + 22224390 AAUAGUAGGUGUGAAUCGCAAUGGUCUGCUGGACUUUUAUCAUGAACAGGUUCAUGGAACUCCUUUAACUAAGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAUGAACAUCAAG .......(((((...(((.(((.((((.((((((.(((..((((((....))))))((..((((((......))))))..))))).)))))).))))...))).))))))))... ( -33.30) >DroSec_CAF1 40618 115 + 1 AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCUUAUCGUGAACAGAUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAAGAACACCAAG .....(((((((......((((..(((.((((((.(((..((((((....))))))((..((((((......))))))..))))).)))))))))))))........))))))). ( -39.54) >DroSim_CAF1 42616 115 + 1 AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCGUAUCGUGAACAGAUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAAGAACGCCAAG .....(((((((......((((..(((.((((((.(....((((((....))))))((..((((((......))))))..))..).)))))))))))))........))))))). ( -37.14) >DroEre_CAF1 46403 115 + 1 AAUAGCUGGCGUAAAUCGCCAUGGUCUGCUGGAACUGUAUCAUCAGCGGGUUUAUGGAUCUCCUCUAACUAAGAAGGUAAUCGAGUGUCCAGGGGACGGAAUGAUGAAUUUCAAG ......(((((.....)))))..((((.((((((((.((((.((....((((...((....))...))))..)).))))....))).))))).))))(((((.....)))))... ( -33.60) >DroYak_CAF1 43211 115 + 1 AAUAGUUGGCGUGAAUCGCCAUGGGCUGCUGGACAUGUACCAUCAGCAGGUUCAUGGCGCUCCUCUAACUAGAAAGGGCAUCGAGUGUCCAGCGGAUGGAAUGAUGAAUUUGCAG ..(((((((.(.((..((((((((((((((((..........)))))).)))))))))).))).)))))))....((((((...)))))).((((((..........)))))).. ( -41.80) >DroPer_CAF1 54537 100 + 1 UCCAGGUUUGAUCAAUCGCCAGGGCCUGAUUGAAGCGUAUCAUAAGCAGUUGCAUGGGGAUCC---------GAAUGCAGUUG-GCGUUGAGUGGAUGGA----UAAGCUUGCA- ..((((((((.(((.(((((((.(((.(((((...((.(((.((.((....)).))..))).)---------)....))))))-)).))).)))).))).----))))))))..- ( -31.60) >consensus AACAGUUGGUGUGAAUCGCCAUGGUCUGCUGGACUCGUAUCAUGAACAGGUUCAUGGAACUCCUUUAACUAGGAAGGAAGUCGAGUGUCCAGAGGAUGGAAUUAUGAACUUCAAG ......(((((.....)))))..((((.((((((.....((((.((....)).)))).((((......((....))......)))))))))).)))).................. (-13.12 = -14.35 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:08 2006