Locus 2852

Sequence ID X_DroMel_CAF1
Location 7,616,790 – 7,616,882
Length 92
Max. P 0.500000
window4680

overview

Window 0

Location 7,616,790 – 7,616,882
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 77.11
Mean single sequence MFE -21.87
Consensus MFE -9.52
Energy contribution -10.24
Covariance contribution 0.72
Combinations/Pair 1.31
Mean z-score -2.02
Structure conservation index 0.44
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7616790 92 - 22224390
CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAGUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUA----GCUGCAGCUU
...............(((((......((((.(((...((-((((((.((((((.....)))))).)))..)))))...))).)----)))..))))) ( -22.70)
>DroSec_CAF1 33882 96 - 1
CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAUUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUAGCUAGCUGCAGCUU
...............(((((((....((((.(((...((-(((((.(((((((.....))))))..).)))))))...))).))))...)).))))) ( -23.40)
>DroSim_CAF1 35882 96 - 1
CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU-CAAGUUCGACUGCUUGAAGCAGUUAAGCAGUUGAGUUGAAUUAGCUAGCUGCAGCUU
...............(((((......((((..(((...(-(((.(((((((((((((.....)))))))))))))))))..)))..))))..))))) ( -25.70)
>DroEre_CAF1 39610 92 - 1
CCAAUUUAAUUACUUAACCUCAUUAAGGCUCAUUACACU-CAAGUUCGACUGCUUGAAGCAAUUCAGCAGCGGAGUUGAACUA----GCUGCAGCUU
............(((((.....)))))(((((......(-(((.((((.(((((.(((....)))))))))))).))))....----..)).))).. ( -23.70)
>DroYak_CAF1 36012 76 - 1
CCAAUUUAAUUACUUAAGCUCAUUA-----------------GGUUCGACUGCUUGAAGCAUUUUAGCAGUAGAGUUGAAUUA----ACUGCAGCUU
...............(((((((.(.-----------------.((((((((.((....((......))...))))))))))..----).)).))))) ( -15.40)
>DroAna_CAF1 32780 78 - 1
GCAAUUUAAUUACUUAAGCU------GGCUCCUGGCACUCCAAGUUGGAGAGCUCCAAAGUUUCCAGCAGC-----UGAAUUA----GCUGAA----
.................(((------((...(((((.((((.....)))).)))....))...)))))(((-----((...))----)))...---- ( -20.30)
>consensus
CCAAUUUAAUUACUUAAGCUCAUUAAGGCUCAUUACCCU_CAAGUUCGACUGCUUGAAGCAGUUUAGCAGUUGAGUUGAAUUA____GCUGCAGCUU
...............(((((...........................((((((.....))))))..(((((................)))))))))) ( -9.52 = -10.24 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:06 2006