Locus 2851

Sequence ID X_DroMel_CAF1
Location 7,616,233 – 7,616,332
Length 99
Max. P 0.584405
window4679

overview

Window 9

Location 7,616,233 – 7,616,332
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.04
Mean single sequence MFE -20.37
Consensus MFE -9.43
Energy contribution -9.65
Covariance contribution 0.22
Combinations/Pair 1.25
Mean z-score -1.98
Structure conservation index 0.46
SVM decision value 0.10
SVM RNA-class probability 0.584405
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7616233 99 + 22224390
ACCCCUCCCGCUCUUUUCGCCAUCGAAAGGUAGCUGCCCAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
.........((((((((((....))))))).))).((((....))))...((((....((((...((.((((((......))))))))..)))).)))) ( -24.50)
>DroSec_CAF1 33328 94 + 1
----CCCCUGCUCUUCUCGCCAUCGAAAGGUAGCUGC-CAUUUUGGCUCUGUCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
----..............((((.....((((((..((-(.....))).))).))).............((((((......))))))........)))). ( -17.70)
>DroSim_CAF1 35329 94 + 1
----CCCCUGCUCUUCUCGCCAUCGAAAGGUAGCUGC-CAUUUUGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
----..............((.(((....))).)).((-((....(((....)))..............((((((......))))))........)))). ( -19.30)
>DroEre_CAF1 39089 79 + 1
-------------------CCUCCGCCUGGCUGCUGC-CAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUGAAUUUUCAUAAUAAUUGGCU
-------------------.....(((.(((((..((-(.....)))..)))))..............((((((......)))))).........))). ( -19.30)
>DroYak_CAF1 35394 79 + 1
-------------------ACACCGAAAGGUAGCUGC-CAUUUGGGCUUUGGCCUCAUAUUGCCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
-------------------..(((....)))....((-((.(((....(((((........)))))..((((((......))))))....))).)))). ( -20.40)
>DroPer_CAF1 45938 86 + 1
----CCGUAGCUGCUGAAGCCA--------UGGCCUC-CAUCUGGGUCCUGGACUCGCAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
----((((((.(((.((..(((--------.(((((.-.....))))).)))..))))))))).....((((((......)))))).........)).. ( -21.00)
>consensus
____CCCC_GCUCUU_UCGCCAUCGAAAGGUAGCUGC_CAUUUGGGCUCUGGCCUCAUAUUACCGAUAGAAAAUAAAUUAAUUUUCAUAAUAAUUGGCU
.....................(((....)))((((.........(((....)))..............((((((......)))))).........)))) ( -9.43 =  -9.65 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:05 2006